Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq318 167 3e-36 seq233 143 4e-29 >seq318 Length=903324 Score = 167 bits (184), Expect = 3e-36 Identities = 598/928 (64%), Gaps = 8/928 (1%) Strand=Plus/Minus Query 79615 GCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCA 79674 |||| ||||||| || || ||||| ||||| | | | | || | || || || Sbjct 24679 GCGATGGATGCCAAGTTGCAGACGGCAACCTCGTCTGGCGCAGAGTACTCGATGATCTCG 24620 Query 79675 GTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 79734 ||||| |||||||| | ||| ||||| || | || | || || ||||| ||| | Sbjct 24619 GTGCACAGGTTACTGCTCTTGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTCGCC 24560 Query 79735 GCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 79794 |||||||| || || || || || | ||||| || || || | ||| | || || | | Sbjct 24559 GCATCCTTGTACAGCATAAAGGGGTTGCCAGTCTCGATTTGCGCTTCCAAGATGGCGTAC 24500 Query 79795 CAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATAT 79854 || | | | ||||| || | |||| | || |||||| | | || Sbjct 24499 CACAGCTTTTGCGCCTTGATGGTGCGCTTGGCGCGACCCTCCGCTTCGTACTTTTCGTAC 24440 Query 79855 AATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATC 79914 | ||| ||||| || || | || ||| | | ||||| || |||| || |||||| Sbjct 24439 AGCGCTTCAAACTCCTCGCCATAGACTTCGGCCATGCCAGGGCACTCGTTGGGGCACATC 24380 Query 79915 AACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 79974 || |||||| || | | | || || ||||| ||||| || || ||||| || || Sbjct 24379 AAGCTCCACTCGCCGTTCTGTTCGACACGCTTCATGAAGAGGTCTGGGATCCACAGCGCG 24320 Query 79975 ATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 80034 || || || | | || ||||| ||||| |||||| || || |||||| Sbjct 24319 TAGAACAGCTCGCGTGCTCGCACTTCCTCCTTTCCGTGATTCTTGCGCAGGTCCAGGAAC 24260 Query 80035 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTT 80094 | | ||| ||||| ||||| || || ||| ||||| | | || || | ||||| Sbjct 24259 TCGAAAATGTCAGAGTGCCAGGGCTCGGCGTAGATGGCAAAGGCGCCAGGCCTCTTGTTG 24200 Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 || || || || | ||| | || ||||| || | |||| || ||| || | || || Sbjct 24199 CCACCTTGGTCAACGTAGCGTGCAGTGTTGTTGAAGACTCGCAGCATGGGGACGATGCCG 24140 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214 ||| |||||||| || | || |||||||| || | ||||| || || Sbjct 24139 TTGCTAAAGCCATTGGTGCCTGCAATGTAGCTTCCGGTGCCGCGAATGTTGTGGATGCTC 24080 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC-GTATCATAGAT 80273 || ||||| || || || | || || | ||||| ||| || | || || ||||| Sbjct 24079 AGGCCTATACCACCGGCAGTCTTGCTAATCATGGCGCA-CGTCTTGAGAGTGTCGTAGAT 24021 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 80333 ||| || ||||| ||||| ||||| | || || || || | ||| | || Sbjct 24020 GCCGTCGATGCTGTCATCCTTCATGCAGACGAGGAAGCACGACGAGAGTTGAGGGTGAGG 23961 Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 || || || || || | ||| || || ||||| ||||| | ||||| |||| || || Sbjct 23960 CGTGCCGGCGTTGAAGAGGGTCGGGGAGGCGTGGGTAAAGTACTTTTCGGACATGAGGTT 23901 Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTG--ATGAATTCCTACCGCGACACGCATT 80451 |||||||||||| | || || | | ||| | || || || || ||||| ||||| Sbjct 23900 GTACGTCTCAATCACGGAATCGACGT--CATCGCCGTGGATGCCAACGGCGACGCGCATA 23843 Query 80452 AACATGTGCTGAGGTCTTTCAACGATCTTGT-TATTTATTTTCAACAAGTAAGATTTTTC 80510 | |||||||||||| | ||| ||| | || ||| || | || ||| ||| || Sbjct 23842 ATCATGTGCTGAGGACGTTCGGCGA-CGCGTCCATTGATGCGAAGCAGGTATGATCGCTC 23784 Query 80511 CAAAGTTTTAAAACCAAAATAGTTGTAT 80538 || || || || ||||| ||||| ||| Sbjct 23783 CAGCGTCTTGAAGCCAAAGTAGTTCTAT 23756 >seq233 Length=223772 Score = 143 bits (158), Expect = 4e-29 Identities = 363/548 (66%), Gaps = 12/548 (2%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || ||| ||| ||||| ||||||| || || || ||||| || | ||| Sbjct 43223 CAGGCAAAGTCGGTGTGAAGACCTTCGTCTCGGGAGATGAGCTCATTGGAGAAGCTCAGT 43282 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 || ||||| || || | ||| || |||||||| ||||| ||||| || || || |||||| Sbjct 43283 CCCGGCATCAGACCCCTCTTCTTGAGCCAAAAGATGGAAGCAAAAGATCCGGAGAAGAAG 43342 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG-----CG-CTGTCA 50133 || || || || ||||||||||| | |||||||| | || || || ||||| Sbjct 43343 ATGCCCTCGACGGCGGCAAAGGCGATCAGTCTCTC-GGAGAA--GGAAGATCGTCTGTCG 43399 Query 50134 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 50193 |||||| | | ||||| || ||||| | || || || ||||| || | |||| Sbjct 43400 GAGATCCACCTGAGTGCCCAGTCAGCCTTTTGCTTGACCACGGGAATCGTCTCGACGGCA 43459 Query 50194 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 50253 | ||| | | | | | | | || | |||||| ||||| | ||| || Sbjct 43460 TCAAACAAGAACTCTCTCTGCTCTGGTTCGCGGATATAAGTGTCGATGAGCAGAGAGTAA 43519 Query 50254 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 50313 | ||||| |||||||| || || || || || ||||| || ||||| ||||| | Sbjct 43520 GTCTCCGAGTGAATGTTCTCCATCATGATTTGGAAACCGTAAAAGCATCTGGCCTCTGCT 43579 Query 50314 ATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCT 50373 ||||| ||| | ||||| || | || || |||||||| || ||||| ||| Sbjct 43580 GCTTGCACCTCTTGCGAGAATCGCTCCACCAAGTTCTCATTCACGATGCCGTCCGAAGCT 43639 Query 50374 GCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATT---C 50430 ||||| || || | || || | ||| || | || ||| | || || || | Sbjct 43640 GCAAAGAAGGCGAGCACGTGAGAGACAAAGTGCCTCTCATTGTCGTTGAGCTTGTTGTCC 43699 Query 50431 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 ||||||| | || || | ||| | |||||| | |||||||| |||||||||||| Sbjct 43700 CAATCATGCAGGTCCTTGCTGAGATCGATTTCTTCTGCGGTCCAAAAAGATGCCTCTGCC 43759 Query 50491 TTTTTATA 50498 || || || Sbjct 43760 TTCTTGTA 43767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718264445495400