Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq318 165 1e-35 >seq318 Length=903324 Score = 165 bits (182), Expect = 1e-35 Identities = 594/922 (64%), Gaps = 8/922 (1%) Strand=Plus/Minus Query 71704 GATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAA 71763 ||||||| || || ||||| ||||| | | | | || | || || || ||||| Sbjct 24673 GATGCCAAGTTGCAGACGGCAACCTCGTCTGGCGCAGAGTACTCGATGATCTCGGTGCAC 24614 Query 71764 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 71823 || ||||| | ||||||||| || | || | || || ||||| ||| ||||||| Sbjct 24613 AGGTTACTGCTCTTGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTCGCCGCATCC 24554 Query 71824 TTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 71883 || || || ||||| || | ||||| || || || | ||| | || || | ||| | Sbjct 24553 TTGTACAGCATAAAGGGGTTGCCAGTCTCGATTTGCGCTTCCAAGATGGCGTACCACAGC 24494 Query 71884 ACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGT 71943 | | ||||| || | |||| | || |||||| | | || | | Sbjct 24493 TTTTGCGCCTTGATGGTGCGCTTGGCGCGACCCTCCGCTTCGTACTTTTCGTACAGCGCT 24434 Query 71944 TCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGAC 72003 || ||||| || || | | | | | | ||||| || || || || |||||||| | Sbjct 24433 TCAAACTCCTCGCCATAGACTTCGGCCATGCCAGGGCACTCGTTGGGGCACATCAAGCTC 24374 Query 72004 CACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 72063 ||||| || | | | || || ||||| ||||| || || ||||| || || || Sbjct 24373 CACTCGCCGTTCTGTTCGACACGCTTCATGAAGAGGTCTGGGATCCACAGCGCGTAGAAC 24314 Query 72064 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 72123 || || | | || ||||| ||||| |||||| || || |||||| | | | Sbjct 24313 AGCTCGCGTGCTCGCACTTCCTCCTTTCCGTGATTCTTGCGCAGGTCCAGGAACTCGAAA 24254 Query 72124 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCC 72183 || ||||| ||||| || || ||| ||||| | | || |||| ||||| || || Sbjct 24253 ATGTCAGAGTGCCAGGGCTCGGCGTAGATGGCAAAGGCGCCAGGCCTCTTGTTGCCACCT 24194 Query 72184 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 72243 || || | ||| | || ||||| || | |||| || ||| || | || || ||| Sbjct 24193 TGGTCAACGTAGCGTGCAGTGTTGTTGAAGACTCGCAGCATGGGGACGATGCCGTTGCTA 24134 Query 72244 GCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCT 72303 |||||||| || | || |||||||| || | ||||| ||| || || ||| Sbjct 24133 AAGCCATTGGTGCCTGCAATGTAGCTTCCGGTGCCGCGAATGTTGTGGATGCTCAGGCCT 24074 Query 72304 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC-GTATCATAGATGCCCTC 72362 || || || || | || || | ||||| ||| || | || || |||||||| || Sbjct 24073 ATACCACCGGCAGTCTTGCTAATCATGGCGCA-CGTCTTGAGAGTGTCGTAGATGCCGTC 24015 Query 72363 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 72422 || || |||||| ||||| | || || || || | ||| | || || || Sbjct 24014 GATGCTGTCATCCTTCATGCAGACGAGGAAGCACGACGAGAGTTGAGGGTGAGGCGTGCC 23955 Query 72423 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGT 72482 || || || | ||| || || ||||| ||||| | ||||| |||| || |||||||| Sbjct 23954 GGCGTTGAAGAGGGTCGGGGAGGCGTGGGTAAAGTACTTTTCGGACATGAGGTTGTACGT 23895 Query 72483 CTCAATAGCTGATTCTATATCCCATTG--ATGTATTCCTACCGCGACACGCATTAACATA 72540 |||||| | || || | | ||| | || || || || ||||| ||||| | ||| Sbjct 23894 CTCAATCACGGAATCGACGT--CATCGCCGTGGATGCCAACGGCGACGCGCATAATCATG 23837 Query 72541 TGCTGAGGTCTTTCAACGATCTTGT-TATTTATTTTCAACAAGTAGGATTTTTCCAAAGT 72599 |||||||| | ||| ||| | || ||| || | || ||| ||| |||| || Sbjct 23836 TGCTGAGGACGTTCGGCGA-CGCGTCCATTGATGCGAAGCAGGTATGATCGCTCCAGCGT 23778 Query 72600 TTTAAAACCAAAATAGTTGTAT 72621 || || ||||| ||||| ||| Sbjct 23777 CTTGAAGCCAAAGTAGTTCTAT 23756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671135131218600