Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq233 246 4e-60 seq318 141 1e-28 seq206 87.8 3e-12 >seq233 Length=223772 Score = 246 bits (272), Expect = 4e-60 Identities = 489/712 (69%), Gaps = 19/712 (3%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 |||||| || ||||| ||||| |||| || |||||||| | ||||| ||||||| Sbjct 43779 ATTTGGCAATACTACAAGAAGGCAGAGGCATCTTTTTGGACCGCAGAAGAAATCGATCTC 43720 Query 125079 TCCAAGGACCTGTACGATTGGGAGA-CTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137 |||||||||| | |||||||| | | | | || || | |||| | | ||| | || Sbjct 43719 AGCAAGGACCTGCATGATTGGGACAACAAGCTCAAC-GACAATGAGAGGCACTTTGTCTC 43661 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACG 125197 ||| | | ||||||||||| | || || || ||||| || || || || || || Sbjct 43660 TCACGTGCTCGCCTTCTTTGCAGCTTCGGACGGCATCGTGAATGAGAACTTGGTGGAGCG 43601 Query 125198 ATTCTCTCAAGAGTTGACCATTC--CAGAGGTGTCGTGCTTTTACGGATTCCAAATCATG 125255 |||||| |||||| || || | |||||| ||||||||||| |||||||||||| Sbjct 43600 ATTCTCGCAAGAGGTG--CAAGCAGCAGAGGCCAGATGCTTTTACGGTTTCCAAATCATG 43543 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCG 125315 || |||||| | |||||||| | |||||| || || |||| || || ||||| || Sbjct 43542 ATGGAGAACATTCACTCGGAGACTTACTCTCTGCTCATCGACACTTATATCCGCGAACCA 43483 Query 125316 CAACGTAAACACATGCTCTTTAACGCAATCGACACG-GTGCCGTCTATACGTAAAAAGGC 125374 | | | | | | | ||| | || |||| ||| | |||| | | ||||||| Sbjct 43482 GAGCAGAGAGAGTTCTTGTTTGATGCCGTCGAGACGATTCCCGTGGTCAAG-CAAAAGGC 43424 Query 125375 TCAATGGGTGATTCGGTGGATCGATGAC-GACAAGTCTTCGTACGCCGACAGACTGGTGG 125433 | | |||| | |||||||| ||| ||| | ||||| | | |||| |||||| | | Sbjct 43423 TGACTGGGCACTCAGGTGGATCTCCGACAGACGA-TCTTCCTTCTCCGAGAGACTGATCG 43365 Query 125434 CATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCA 125493 | || |||||||| |||||||||||||| || || |||||| ||||||||||||||| Sbjct 43364 CCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGATCTTTTGCTTCCATCTTTTGGCTCA 43305 Query 125494 AGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGG 125553 ||||| | || || ||||| ||||||| | || ||| | || || |||||||| | Sbjct 43304 AGAAGAGGGGTCTGATGCCGGGACTGAGCTTCTCCAATGAGCTCATCTCCCGAGACGAAG 43245 Query 125554 GCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGAT 125613 | || ||| ||||||||| || || ||| | || || | | |||| || Sbjct 43244 GTCTTCACACCGACTTTGCCTGCCTGCTCTTTTCCCAC---CT-CAAGAAGCGTGCCCAT 43189 Query 125614 CCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTC 125673 ||| || | ||||| ||| | ||||| || || ||| ||| | | ||| | Sbjct 43188 CCA-----GACACGGTCAAGCGCATCATCACCGAAGCTGTCGAGATTGAAAAGGCGTTCC 43134 Query 125674 TAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTG 125725 | ||||| | || || ||| |||||||||||||| ||| | ||||| Sbjct 43133 TGACCGACGCACTGCCCGTCTCTTTGATTGGCATGAACGCCAACTTGATGTG 43082 >seq318 Length=903324 Score = 141 bits (156), Expect = 1e-28 Identities = 331/497 (67%), Gaps = 2/497 (0%) Strand=Plus/Plus Query 96862 CACGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAAC 96921 |||| |||||| || || ||||| || |||| ||||| | ||| ||||| || | Sbjct 24178 CACGCTACGTTGACCAAGGTGGCAACAAGAGGCCTGGCGCCTTTGCCATCTACGCCGAGC 24237 Query 96922 CTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGG 96981 | |||||| | ||| |||| || || | || ||||||| || || || || | Sbjct 24238 CCTGGCACTCTGACATTTTCGAGTTCCTGGACCTGCGCAAGAATCACGGAAAGGAGGAAG 24297 Query 96982 CACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCA 97041 ||||| | || |||| || || || ||| | ||||| | ||||||||||| ||| Sbjct 24298 TGCGAGCACGCGAGCTGTTCTACGCGCTGTGGATCCCAGACCTCTTCATGAAGCGTGTCG 24357 Query 97042 ACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCT 97101 | | ||| | |||||| | ||||||||| || || || || || |||| || Sbjct 24358 AACAGAACGGCGAGTGGAGCTTGATGTGCCCCAACGAGTGCCCTGGCATGGCCGAAGTCT 24417 Query 97102 GGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAG-A 97160 ||||| |||||||| || |||| ||||| ||||| || | | | | Sbjct 24418 ATGGCGAGGAGTTTGAAGCGCTGTACGAAAAGTACGAAGCGGAGGGTCGCGCCAAGCGCA 24477 Query 97161 CGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACT 97220 | | || | || | | | |||||| | |||||| || || || | |||||||| | Sbjct 24478 CCA-TCAAGGCGCAAAAGCTGTGGTACGCCATCTTGGAAGCGCAAATCGAGACTGGCAAC 24536 Query 97221 CCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACC 97280 || | || || ||||||||| | | ||| ||||| |||||||| || |||||||| Sbjct 24537 CCCTTTATGCTGTACAAGGATGCGGCGAACCGCAAGAGCAACCAGAAGAACCTGGGCACC 24596 Query 97281 ATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCA 97340 |||||| || || |||||||| || || | |||||| | | || |||||| || Sbjct 24597 ATCAAGAGCAGTAACCTGTGCACCGAGATCATCGAGTACTCTGCGCCAGACGAGGTTGCC 24656 Query 97341 GTTTGCGTTCTGGCATC 97357 || ||| ||||||| Sbjct 24657 GTCTGCAACTTGGCATC 24673 >seq206 Length=298136 Score = 87.8 bits (96), Expect = 3e-12 Identities = 174/250 (70%), Gaps = 7/250 (3%) Strand=Plus/Minus Query 69988 CCGAAAG-GGTGTACACATTTGGAGCGGCAACAGTAGTCGA-AGCGTTTTG-GATTCGCT 70044 |||| || || || ||||||||| |||||| | |||| |||||||| || |||| Sbjct 45906 CCGACAGAGGGGTGCACATTTGGGACGGCAATGGC--TCGAGAGCGTTTTTAGACTCGCG 45849 Query 70045 CGGCTTCACCGACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCA 70104 ||| || | || | || ||||| |||| ||||||||||| ||||| ||||| || Sbjct 45848 CGGGTTAAAGGAGCGTAGGGAAGGCGACTTGGGCCCAGTGTACGGCTTCCAATGGAGACA 45789 Query 70105 CTCGGGCACCAAGTATGTAGACTGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAAT 70163 || ||| || |||| ||||||| ||| || || || |||| || || || Sbjct 45788 CTTTGGCGCCGAGTACACGCACTGCGATGAC-GATTACAGCGGCAAGGGCGTGGACCAGC 45730 Query 70164 TGCAGACAATCATTGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCT 70223 || | | ||||||| | |||| ||||||||||||| |||| ||| | || | Sbjct 45729 TGGCGGAGGTGATTGACAAGATAAAGAGCAATCCAACAGATCGGAGAATCATCCTGAGTG 45670 Query 70224 CATGGAATCC 70233 |||||||||| Sbjct 45669 CATGGAATCC 45660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741054707328600