Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq233 104 2e-17 seq275 91.5 1e-13 >seq233 Length=223772 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||| ||| || || || |||||||| ||| || | | ||||||| Sbjct 211265 ACCAAGTGAAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGACCGTCTTCG 211324 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||||||||| | || | ||||| || || ||||| ||||||||||| Sbjct 211325 AGTTGTTTGCCAGCAAAAATGAGGCGTTGCTGATCAGGAGGAATGCCTTCTTTGTCTTGG 211384 Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||||| ||| || | || |||||||||||| | ||||| || || || || || || Sbjct 211385 ATCTTTGC-CTTGACGTTGTCAATGGTATCGCTACTCTCTACCTCCAAAGTGATCGTCTT 211443 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || ||||| ||||| || |||||| Sbjct 211444 TCCGGTGAGGGTTTTGACAAAGATCTGCATA 211474 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || |||||||| || || || || |||||||| || || | | ||||||| Sbjct 211037 ACCAAATGAAGAGTACTTTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGACCGTCTTCG 211096 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| ||||| || | || | | ||| |||||| ||| || || |||||||| | Sbjct 211097 AGTTGCTTGCCGGCAAAGATGAGCCTTTGCTGGTCGGGTGGGATGCCCTCTTTGTCTTGA 211156 Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||||| ||| ||| | || ||||||||||| | || || || || ||||| || || Sbjct 211157 ATCTTTGC-CTTGACATTGTCAATGGTATCGCTGCTCTCCACCTCCAAAGTAATCGTCTT 211215 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||| || || |||||||||||| Sbjct 211216 TCCAGTGAGAGTCTTCACGAAAATTTGCATA 211246 >seq275 Length=588737 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| ||| || || || |||||||| ||| ||| | || | || || | || Sbjct 39399 TGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGCCATCCTCGAGCTGC 39340 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||||||| | || | |||||||||||| |||||||| || ||||| || ||| Sbjct 39339 TTGCCAGCGAAGATGAGACGTTGTTGGTCAGGAGGAATTCCCTCCTTGTCTTGGATCTTG 39280 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || || || || | || || || ||||| ||||| ||||| ||| Sbjct 39279 GCCTTCACATTGTCGATCGTGTCCGAAGACTCGACCTCCAAGGTGATGGTCTTACCCGTC 39220 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || || ||||| ||||| Sbjct 39219 AGGGTCTTGACGAAAATCTGCAT 39197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362177059181385