Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq233 165 2e-35 >seq233 Length=223772 Score = 165 bits (182), Expect = 2e-35 Identities = 151/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || |||||||| || ||||| || || || | ||||||||| |||||||| ||||||||| Sbjct 211283 TCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGACCGTCTTCGAGTTGTTTGCCAGCAAAA 211342 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | || ||||||||||| || |||||||| || || |||||||| || || || Sbjct 211343 ATGAGGCGTTGCTGATCAGGAGGAATGCCTTCTTTGTCTTGGATCTTTGCCTTGACGTTG 211402 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | |||||||||| |||||||| | || || ||||| || || || ||||| ||| Sbjct 211403 TCAATGGTATCGCTACTCTCTACCTCCAAAGTGATCGTCTTTCCGGTGAGGGTTTTGACA 211462 Query 104549 AATATCTGCAT 104559 || |||||||| Sbjct 211463 AAGATCTGCAT 211473 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || | ||| | ||| ||| ||||| || || |||||||| || || | |||||| Sbjct 211033 AAGCACCAAATGAAGAGTACTTTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGACCGTC 211092 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| ||||| || || ||||| || ||||| || || || || || || || ||||| || Sbjct 211093 TTCGAGTTGCTTGCCGGCAAAGATGAGCCTTTGCTGGTCGGGTGGGATGCCCTCTTTGTC 211152 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||||| || ||||| || | ||||||||| || ||||| | ||||| || Sbjct 211153 TTGAATCTTTGCCTTGACATTGTCAATGGTATCGCTGCTCTCCACCTCCAAAGTAATCGT 211212 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| || || || || || || ||||| Sbjct 211213 CTTTCCAGTGAGAGTCTTCACGAAAATTTGCAT 211245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151391245138380