Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18]
485 sequences; 26,090,089 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq221 149 6e-31
seq233 91.5 1e-13
seq275 84.2 2e-11
>seq221
Length=819827
Score = 149 bits (164), Expect = 6e-31
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| || | ||| |||||||| | ||| | ||| |||||||| || | ||| || || |
Sbjct 382196 CCGCCACGCAAACGCAACACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCCGAC 382137
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| || | |||||||||||| || || ||||||| |||||||| ||||| ||||||
Sbjct 382136 AGGGTCCTTCCATCCTCCAGCTGCTTGCCCGCAAAGATCAATCTTTGTTGATCGGGAGGA 382077
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
||||| || ||||| | || || |||||||| | ||| |||||| | | |||||
Sbjct 382076 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATAGTGTCCGAGCTCTCGACC 382017
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | ||||||||| || ||||| | || ||||||||||| |||||
Sbjct 382016 TCCAGCGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 381970
>seq233
Length=223772
Score = 91.5 bits (100), Expect = 1e-13
Identities = 113/155 (73%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
|| || || ||||| || |||| || | | ||||||||| |||||||| |||||||||
Sbjct 211319 TCTTCGAGTTGTTTGCCAGCAAAAATGAGGCGTTGCTGATCAGGAGGAATGCCTTCTTTG 211378
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | || |||||||||||| | | | || || || || || | |||||
Sbjct 211379 TCTTGGATCTTTGCCTTGACGTTGTCAATGGTATCGCTACTCTCTACCTCCAAAGTGATC 211438
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| ||||| || || ||||| ||||||||||||||
Sbjct 211439 GTCTTTCCGGTGAGGGTTTTGACAAAGATCTGCAT 211473
>seq275
Length=588737
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 94817 TCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAG 94876
||||| || | ||| || ||| || ||| || |||||| ||||| || || | |||
Sbjct 39387 TCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGCCATCCTCGAGCTGCTTGCCAGCGAAG 39328
Query 94877 ATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCG 94936
|| | | ||| || || |||||||| || || ||||| | || || ||||| || |
Sbjct 39327 ATGAGACGTTGTTGGTCAGGAGGAATTCCCTCCTTGTCTTGGATCTTGGCCTTCACATTG 39268
Query 94937 CCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACA 94996
||| ||||| | ||||| || | |||||||| || || || || || || ||
Sbjct 39267 TCGATCGTGTCCGAAGACTCGACCTCCAAGGTGATGGTCTTACCCGTCAGGGTCTTGACG 39208
Query 94997 AAGATCTGCATGCT 95010
|| |||||||||||
Sbjct 39207 AAAATCTGCATGCT 39194
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448288482234600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |