Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq65 170 3e-38 seq273 89.7 8e-14 >seq65 Length=872773 Score = 170 bits (188), Expect = 3e-38 Identities = 178/230 (77%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 16447 CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCG 16506 ||||||| | ||||| ||||||||||| ||||||||||| |||||||||||||| || || Sbjct 586386 CAGATCT-TGCGAGACAACATCCAAGGTATCACCAAGCCCGCTATCCGTCGTCTTGCGCG 586328 Query 16507 TCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTG-ATGTTTTGA 16565 ||||||||| ||||||||| ||||||| | | || || ||| | || | ||| | || Sbjct 586327 TCGTGGTGGTGTCAAGCGTATCTCTGGTCTCATTTACGACGAGGTCCGAGGATGCCT-GA 586269 Query 16566 AGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTA 16625 ||||||||||| || || |||| || || || ||| || |||||||| || || | Sbjct 586268 AGATCTTCCTCGAGGGTGTGATCCGCGACTCTGTCACCTACACGGAGCACGCCAAGCGCA 586209 Query 16626 AGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGT 16675 |||||||||| || | || ||||||| || | || || ||||||||| Sbjct 586208 AGACTGTCACTTCTCTCGACGTCGTCTACGCTCTCAAGCGCCAAGGCCGT 586159 >seq273 Length=345306 Score = 89.7 bits (98), Expect = 8e-14 Identities = 79/96 (82%), Gaps = 2/96 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| | | || || |||||||| || ||||||||||| || | Sbjct 112361 CGCCAAGCGTCACCGCAAGATTT-TGCGTGACAACATCCAGGGTATCACCAAGCCCGCCA 112303 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTG 16526 | |||||||| || |||||||| || |||||||||| Sbjct 112302 TTCGTCGTCTTGCACGTCGTGGAGGTGTCAAGCGTG 112267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074756561105