Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18]
485 sequences; 26,090,089 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq318 179 5e-40
>seq318
Length=903324
Score = 179 bits (198), Expect = 5e-40
Identities = 557/855 (65%), Gaps = 8/855 (1%)
Strand=Plus/Minus
Query 62898 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 62957
||||||| || || ||||| ||||| | | | | || | || ||||| |||||
Sbjct 24673 GATGCCAAGTTGCAGACGGCAACCTCGTCTGGCGCAGAGTACTCGATGATCTCGGTGCAC 24614
Query 62958 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63017
|| ||||| | |||||| || || | || | || || ||||| ||| |||||||
Sbjct 24613 AGGTTACTGCTCTTGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTCGCCGCATCC 24554
Query 63018 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 63077
|| || || || || || | ||||| || || || | ||| | || || | ||| |
Sbjct 24553 TTGTACAGCATAAAGGGGTTGCCAGTCTCGATTTGCGCTTCCAAGATGGCGTACCACAGC 24494
Query 63078 ACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGT 63137
| | ||||| || | ||| | | || |||||| | |||| |
Sbjct 24493 TTTTGCGCCTTGATGGTGCGCTTGGCGCGACCCTCCGCTTCGTACTTTTCGTACAGCGCT 24434
Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197
|| ||||| || || | || | | ||| ||||| || || | || |||||||| |
Sbjct 24433 TCAAACTCCTCGCCATAGACTTCGGCCATGCCAGGGCACTCGTTGGGGCACATCAAGCTC 24374
Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63257
||||| |||| | | || || ||||| ||||| || || ||||| || || ||
Sbjct 24373 CACTCGCCGTTCTGTTCGACACGCTTCATGAAGAGGTCTGGGATCCACAGCGCGTAGAAC 24314
Query 63258 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63317
|| || | | || |||||| ||||| |||||| || || |||||| | | |
Sbjct 24313 AGCTCGCGTGCTCGCACTTCCTCCTTTCCGTGATTCTTGCGCAGGTCCAGGAACTCGAAA 24254
Query 63318 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63377
|| ||||| ||||| || || ||| ||||| | | ||||||| ||||| || ||
Sbjct 24253 ATGTCAGAGTGCCAGGGCTCGGCGTAGATGGCAAAGGCGCCAGGCCTCTTGTTGCCACCT 24194
Query 63378 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63437
|| || | ||| | || ||||| || | |||| || ||| || | || ||||| | |
Sbjct 24193 TGGTCAACGTAGCGTGCAGTGTTGTTGAAGACTCGCAGCATGGGGACGATGCCGTT-GCT 24135
Query 63438 ATA-CCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 63496
| | |||||||| || | || |||||||| || | ||||| || || || ||
Sbjct 24134 AAAGCCATTGGTGCCTGCAATGTAGCTTCCGGTGCCGCGAATGTTGTGGATGCTCAGGCC 24075
Query 63497 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC-GTGTCATAGATACCCT 63555
||| || || || | || || | ||||| ||| || | ||||| ||||| || |
Sbjct 24074 TATACCACCGGCAGTCTTGCTAATCATGGCGCA-CGTCTTGAGAGTGTCGTAGATGCCGT 24016
Query 63556 CTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 63615
| ||||| ||||| ||||| | || || || || | ||| | || || |
Sbjct 24015 CGATGCTGTCATCCTTCATGCAGACGAGGAAGCACGACGAGAGTTGAGGGTGAGGCGTGC 23956
Query 63616 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 63675
| || || || | ||| || || ||||| ||||| | ||||| || | || |||||||
Sbjct 23955 CGGCGTTGAAGAGGGTCGGGGAGGCGTGGGTAAAGTACTTTTCGGACATGAGGTTGTACG 23896
Query 63676 TCTCAATAGCTGAGTCTATATCCCATTG--ATGAATTCCTACTGCGACACGCATTAACAT 63733
||||||| | || || | | ||| | || || || || ||||| ||||| | |||
Sbjct 23895 TCTCAATCACGGAATCGACGT--CATCGCCGTGGATGCCAACGGCGACGCGCATAATCAT 23838
Query 63734 GTGCTGAGGTCTTTC 63748
||||||||| | |||
Sbjct 23837 GTGCTGAGGACGTTC 23823
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622943423382600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |