Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq318 228 8e-55 seq275 104 2e-17 seq233 89.7 5e-13 >seq318 Length=903324 Score = 228 bits (252), Expect = 8e-55 Identities = 950/1451 (65%), Gaps = 45/1451 (3%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||| || || ||||| ||||||| |||||||||| || | ||| || ||| |||| Sbjct 25246 TTGACAACTTGGAACTCTCCGGCCAGCACACGACGCGTGTAGATGTTGGATGTGTAGGGC 25187 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 ||||| | ||||| ||| || || |||| ||| | ||||| |||||| || | | Sbjct 25186 TCAAAGCATTCGTTGAAGCCGAGAATCTGAGAGGTGGAGGCGGTAGGCATGGGTGCGAGC 25127 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTT--AGCGTACCCCAATCCC 145235 | | || ||||| || ||||||| || |||| || | ||||| |||||||| Sbjct 25126 AGCAGCGAGTTGCGAAGACCGTGCTCG--GAAATCTTGCTCTTCAGCGTGGTCCAATCCC 25069 Query 145236 ATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGC 145295 | | || || | ||| |||||||||||||||||| |||| | |||||| Sbjct 25068 ACAAGTCAGAAGGTGTGACGCCCCACATGTCGTACTGCAGCTCTCCCTTGGAGGCGGGCG 25009 Query 145296 TGCCTTGAAAGGAACTGTAACTGCCCCAAG-TTTTGGCGAGCTCGCAACTCGCCTCCAGA 145354 |||||| ||| ||| | | || | || ||| ||||||||| |||||| Sbjct 25008 AGCCTTGGTAGG-TCTGGTAGGGACCGTCGCGTTGGGCAAGCTCGCAAGAGCGCTCCAGT 24950 Query 145355 GCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCG 145414 ||| || || || |||||| ||||||| |||||||| |||||| || Sbjct 24949 GCGGCGTGGTAGATGGTCTCGAAAATTTGCTTGTTGAGCTTGCGCGCTTCGGGCGAGTCA 24890 Query 145415 TACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGC 145474 | | ||||| || | | ||||||||||| || || || | ||| | ||||||||| Sbjct 24889 AAGGCCATGCCGAGGATCATGAAAGCATCGGCCAGACCTTGCACTCCGATGCCGATGGGA 24830 Query 145475 CGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATA-TCGATTACGGTCGATAAT 145533 || || | |||| | |||| ||||| ||||| | | | || |||||| || Sbjct 24829 CGGTGACGGAAGTTGGAACGACGCGCCTCCTCGACGGGATAGTAGTTGAC-GTCGATGAT 24771 Query 145534 TTTATTCAAGTTTCGCAC-TACTACCTTTGTAATGTGCCGCAACTTT-TCAAAGTCAAAC 145591 |||| ||| | ||| | ||||||| | | || || ||| | ||||| | Sbjct 24770 GCGGTTCAGGTTGC-CACAGATGACCTTTGCGACG-GCGTGAAGTTTCTTAAAGTTGTA- 24714 Query 145592 CGAGCCTCGTC-AACGACCACACAGCTATTG-ACGGCGATCGACGCCAAATTACAAACTG 145649 ||| | | ||| || | | | || | | |||||| || ||||| || || || | Sbjct 24713 CGA-CTTGGTCGAAGTGTCGATGAACGATGGCAGGGCGATGGATGCCAAGTTGCAGACGG 24655 Query 145650 CCGTCTCCTC-GGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATG 145708 | ||| || |||| | ||| | | |||||||| ||||| || || | |||||| Sbjct 24654 CAACCTCGTCTGGCG-CAGAGTACTCGATGATCTCGGTGCACAGGTTACTGCTCTTGATG 24596 Query 145709 GTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGT 145768 || ||||| || | ||| || || || | ||| ||| |||||||| ||||| | || Sbjct 24595 GTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTCGCCGCATCCTTGTACAGCATAAAGGGG 24536 Query 145769 CCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCA-AG-TCCTGCG-CACGCACC 145825 ||||||||| | |||| |||| ||| || || || | |||| | | Sbjct 24535 TTGCCAGTCTCGATTTGCGCTTCCAAGAT--GGCGTACCACAGCTTTTGCGCCTTGATGG 24478 Query 145826 TGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCG 145885 ||| ||| | ||| ||||| ||||||| || ||| ||| | |||||| | || Sbjct 24477 TGC-GCTTGGCGCGACCCTCCGCTTCGTACTTTTCGTACAGCGCTTCAAACTCCTCGCCA 24419 Query 145886 TAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCG 145945 ||| |||| || ||| || |||| |||||| ||||||| ||| ||||||| Sbjct 24418 TAGACTTCGGCCATGCCAGGGCACTCGTTGGGGCACATCAAGCTCCACTCGCCGTTCTGT 24359 Query 145946 TTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTG 146005 | ||| |||| ||| || | ||||| | |||||||||||| | || ||||| || | | Sbjct 24358 TCGACACGCTTCATGAAGAGGTCTGGGATCCACAGCGCGTAGAACAGCTCGCGTGC-TCG 24300 Query 146006 CA-ATCCTCAGCACCCATGTTTC--GCTTCAAATTAAGCACACT-ATAGATGTCCGCGTG 146061 || ||||| || || ||| || || | || | ||| | ||||| | ||| Sbjct 24299 CACTTCCTC-CTTTCCGTGATTCTTGC-GCAGGTCCAGGA-ACTCGAAAATGTCAGAGTG 24243 Query 146062 CCACGGTTCAATATAGACGGCGAGGGCTCC--TTTTCGT-TTGCCACCCTGGTCCACGTG 146118 ||| || || |||| ||| | ||| || || | |||||||| ||||| |||| Sbjct 24242 CCAGGGCTCGGCGTAGATGGCAAAGGCGCCAGGCCTCTTGTTGCCACCTTGGTCAACGTA 24183 Query 146119 ACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGT 146178 ||| | ||||||| ||||| |||| |||||| ||| |||| || | ||| || || Sbjct 24182 GCGTGCAGTGTTGTTGAAGACTCGCAGCATGGGGACGATGCCGTTGCTAAAGCCATTGGT 24123 Query 146179 AGAGTTTATTCT-GGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCGC 146237 | | | | | | | ||| | ||| | | || | ||| ||| | ||| ||| Sbjct 24122 -GCCTGCAATGTAGCTTCCGGTGCCGCGAATGTTGTGGATGCTCAGGCCTATACCACCGG 24064 Query 146238 CGTACTTGGATATAGCGGCGCA-GTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATC- 146295 | |||| || |||||| ||| ||| || |||||||||||||| ||||| || Sbjct 24063 CAGTCTTGCTAATCATGGCGCACGTC-TTGAGAGTGTCGTAGATGCCGTCGATGCTGTCA 24005 Query 146296 -GCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGA 146354 |||| |||| || || |||||||| | | || | ||||| || || || Sbjct 24004 TCCTTC--ATGCAGACGAGGAAGCACGACGAGAGTTGAGGGTGAGGCGTGCCGGCGTTGA 23947 Query 146355 ACAACGTCGGGCTCGCGTGCGTAAA-CATTTTTCGGCTCATCATCCGATACGTTTCGATA 146413 | | |||||| ||||| ||||| | ||||||| ||| | ||||| || || Sbjct 23946 AGAGGGTCGGGGAGGCGTGGGTAAAGTACTTTTCGG-ACATGAGGTTGTACGTCTCAATC 23888 Query 146414 GCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGC 146473 || | | ||| ||||| || ||||| | ||||||||||| | |||||| || || Sbjct 23887 ACGGAATCGACGTCATCGCCGTGGATGCCAACGGCGACGCGCATAATCATGTGCTGAGGA 23828 Query 146474 CGCTCCGCCAC 146484 || || || || Sbjct 23827 CGTTCGGCGAC 23817 >seq275 Length=588737 Score = 104 bits (114), Expect = 2e-17 Identities = 141/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 131043 CTCCTTTTGAATGTTGTAATCGCTCATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGT 131101 |||||| || |||||||| ||| || || | || | ||||| ||||||||||| ||| Sbjct 39388 CTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGCCA-TCCTCGAGCTGCTTGCCAGCGA 39330 Query 131102 AGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCT 131161 |||| | ||| || ||||| ||||| ||||| || ||||| ||| || ||| | | Sbjct 39329 AGATGAGACGTTGTTGGTCAGGAGGAATTCCCTCCTTGTCTTGGATCTTGGCCTTCACAT 39270 Query 131162 GCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTA 131221 || | || || | ||||||| || | ||| | ||| ||||| || || || || | Sbjct 39269 TGTCGATCGTGTCCGAAGACTCGACCTCCAAGGTGATGGTCTTACCCGTCAGGGTCTTGA 39210 Query 131222 CGAAAATCTGCATG 131235 |||||||||||||| Sbjct 39209 CGAAAATCTGCATG 39196 >seq233 Length=223772 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| || || | || |||||| ||||||||||| ||| Sbjct 211247 CCACCACGGAGACGAAGCACCAAGTGAAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAA 211306 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||| || || || ||||| || | || | || ||||| || ||||| Sbjct 211307 AGGGTGCGACCGTCTTCGAGTTGTTTGCCAGCAAAAATGAGGCGTTGCTGATCAGGAGGA 211366 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| ||| || ||||| | || | |||||| | ||| | Sbjct 211367 ATGCCTTCTTTGTCTTGGATCTTTGCCTTGACGTTGTCAATGGTATCGCTACTCTCTACC 211426 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || ||||| || ||||| || || |||||||| Sbjct 211427 TCCAAAGTGATCGTCTTTCCGGTGAGGGTTTTGACAAAGATCTGCAT 211473 Score = 86.0 bits (94), Expect = 6e-12 Identities = 198/297 (67%), Gaps = 11/297 (4%) Strand=Plus/Minus Query 46147 TTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTT 46206 ||| ||||| | || | |||||||| || |||||| |||| || || || |||| Sbjct 43383 TTCTCCGAGAGACTGATCGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGATCTTTT 43324 Query 46207 GCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAG 46266 || ||||||||| |||| | | ||| | ||||| || |||| || ||| ||| Sbjct 43323 GCTTCCATCTTTTGGCTCAAGAAGAGGGGTCTGATGCCGGGACTGAGCTTCTCCAATGAG 43264 Query 46267 CTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCT-CTACTATAACACTCG 46325 || || || || ||||| || || || || |||||||| || || || | | ||| Sbjct 43263 CTCATCTCCCGAGACGAAGGTCTTCACACCGACTTTGCCTGCCTGCTCTTTTCCCAC--- 43207 Query 46326 CGTGCACGACAAGCTTGCGC---CCGACACCGTGCTGAGCATGTTCAAGGAGGCGGTGGC 46382 | | | |||| ||| | | ||||| || | |||| ||| || || || | Sbjct 43206 ----CTCAAGAAGCGTGCCCATCCAGACACGGTCAAGCGCATCATCACCGAAGCTGTCGA 43151 Query 46383 CATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGC 46439 ||||| |||| ||| | || | ||||||||||| | || | ||||||||||| Sbjct 43150 GATTGAAAAGGCGTTCCTGACCGACGCACTGCCCGTCTCTTTGATTGGCATGAACGC 43094 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 131050 TGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAA 131109 || |||||||| ||||||| |||||| ||| || ||||||||||||||| |||| | | Sbjct 211970 TGGATGTTGTAGTCGCTCAAGGTGCGGCCGTCTTCGAGCTGCTTGCCTGCGAAGATGAGA 212029 Query 131110 CGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACA 131169 || || ||||| || || || || || ||||| ||| || |||| | || | | Sbjct 212030 CGTTGTTGGTCAGGGGGAATACCCTCCTTGTCTTGGATCTTGGCTTTGACGTTGTCGATA 212089 Query 131170 GTATCGGTGGACTCGA 131185 || || | |||||||| Sbjct 212090 GTGTCAGAGGACTCGA 212105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472009938422400