Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq233 102 7e-17 seq275 89.7 4e-13 >seq233 Length=223772 Score = 102 bits (112), Expect = 7e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || |||||| |||||| || ||||||||||||| | ||| |||| Sbjct 211262 AGCACCAAGTGAAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGACCGTCT 211321 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||||||||| ||| |||| || || || || || ||| | ||| |||||||| Sbjct 211322 TCGAGTTGTTTGCCAGCAAAAATGAGGCGTTGCTGATCAGGAGGAATGCCTTCTTTGTCT 211381 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || ||||| ||| || | | | | || |||| ||| |||| ||||| | Sbjct 211382 TGGATCTTTGC--CTTGACGTTGTCAATGGTATCGCTACTCTCTACCTCCAAAGTGATCG 211439 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | |||||||| || ||||||||||| |||||||| Sbjct 211440 TCTTTCCGGTGAGGGTTTTGACAAAGATCTGCAT 211473 >seq275 Length=588737 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||| |||||| || ||||||||||||| || || || | ||||| | || Sbjct 39399 TGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGCCATCCTCGAGCTGC 39340 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| || | || || || |||||||| ||| | ||||| ||||| || || Sbjct 39339 TTGCCAGCGAAGATGAGACGTTGTTGGTCAGGAGGAATTCCCTCCTTGTCTTGGATCTTG 39280 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || |||||| | | | | ||||| | ||| |||| ||||||||| || || | Sbjct 39279 GC--CTTCACATTGTCGATCGTGTCCGAAGACTCGACCTCCAAGGTGATGGTCTTACCCG 39222 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || ||||| ||||||||||| Sbjct 39221 TCAGGGTCTTGACGAAAATCTGCAT 39197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405085605550150