Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq252 136 3e-27 seq142 136 3e-27 seq118 136 3e-27 seq233 125 5e-24 seq221 87.8 1e-12 seq275 84.2 1e-11 seq89 84.2 1e-11 >seq252 Length=544549 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||| ||| || |||||||| Sbjct 56227 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATGGGGACAGTGGGAATCTCGT 56168 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 56167 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 56133 Score = 87.8 bits (96), Expect = 1e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 19958 AAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATTTA 20017 |||| ||||||| |||||||||||||||||||||||||||||||||| | |||||||| Sbjct 54220 AAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCCCCAATATTTA 54161 Query 20018 GCCTTA 20023 || ||| Sbjct 54160 GCTTTA 54155 >seq142 Length=2585 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||| ||| || |||||||| Sbjct 187 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATGGGGACAGTGGGAATCTCGT 246 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 247 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 281 Score = 87.8 bits (96), Expect = 1e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 19958 AAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATTTA 20017 |||| ||||||| |||||||||||||||||||||||||||||||||| | |||||||| Sbjct 2194 AAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCCCCAATATTTA 2253 Query 20018 GCCTTA 20023 || ||| Sbjct 2254 GCTTTA 2259 >seq118 Length=767018 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||| ||| || |||||||| Sbjct 652822 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATGGGGACAGTGGGAATCTCGT 652763 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 652762 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 652728 Score = 87.8 bits (96), Expect = 1e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 19958 AAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATTTA 20017 |||| ||||||| |||||||||||||||||||||||||||||||||| | |||||||| Sbjct 650815 AAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCCCCAATATTTA 650756 Query 20018 GCCTTA 20023 || ||| Sbjct 650755 GCTTTA 650750 >seq233 Length=223772 Score = 125 bits (138), Expect = 5e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | |||||| ||||| ||||||||||| ||||| ||||| || | Sbjct 211245 TACCACCACGGAGACGAAGCACCAAGTGAAGCGTGCTCTCCTTCTGAATGTTGTAGTCGG 211304 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | || |||| || | |||||| || ||||| || |||||||| ||||| | | Sbjct 211305 AAAGGGTGCGACCGTCTTCGAGTTGTTTGCCAGCAAAAATGAGGCGTTGCTGATCAGGAG 211364 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||||||||| || ||| ||| || || | | ||||| | ||| || | Sbjct 211365 GAATGCCTTCTTTGTCTTGGATCTTTGCCTTGACGTTGTCAATGGTATCGCTACTCTCTA 211424 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || || || || || || | |||||| || || |||||||| Sbjct 211425 CCTCCAAAGTGATCGTCTTTCCGGTGAGGGTTTTGACAAAGATCTGCAT 211473 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | || ||| | ||||||||||||||| || ||||| || || ||||| ||||| Sbjct 211018 ACCACCGCGCAGACGAAGCACCAAATGAAGAGTACTTTCCTTCTGGATGTTGTAGTCAGA 211077 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | || |||| || | ||| || |||||||| || || | ||| || |||| || Sbjct 211078 AAGCGTGCGACCGTCTTCGAGTTGCTTGCCGGCAAAGATGAGCCTTTGCTGGTCGGGTGG 211137 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || ||| |||||||| ||| ||| ||| ||||| | | ||||| | || || || Sbjct 211138 GATGCCCTCTTTGTCTTGAATCTTTGCCTTGACATTGTCAATGGTATCGCTGCTCTCCAC 211197 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || ||||| || || || || | || |||||||| || ||||| Sbjct 211198 CTCCAAAGTAATCGTCTTTCCAGTGAGAGTCTTCACGAAAATTTGCAT 211245 >seq221 Length=819827 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 ||| || | |||||||||||| | || |||||| ||||| ||||| ||||| || || Sbjct 382197 ACCGCCACGCAAACGCAACACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCCGA 382138 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || | | | || || | || || || ||||| || | | ||||||||||| || Sbjct 382137 CAGGGTCCTTCCATCCTCCAGCTGCTTGCCCGCAAAGATCAATCTTTGTTGATCGGGAGG 382078 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | || || |||||| || || ||| ||||| | || ||| || || || || Sbjct 382077 AATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATAGTGTCCGAGCTCTCGAC 382018 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || || || |||||||| ||||| || || ||||| Sbjct 382017 CTCCAGCGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 381970 >seq275 Length=588737 Score = 84.2 bits (92), Expect = 1e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 ||||||||||||||||| || || ||||| || |||| | | | || || | || Sbjct 39399 TGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGCCATCCTCGAGCTGC 39340 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || || || || || |||||||| || | || | || || ||||| || || Sbjct 39339 TTGCCAGCGAAGATGAGACGTTGTTGGTCAGGAGGAATTCCCTCCTTGTCTTGGATCTTG 39280 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||||||||| | || || || | || || || || || || || ||||||||| Sbjct 39279 GCCTTCACATTGTCGATCGTGTCCGAAGACTCGACCTCCAAGGTGATGGTCTTACCCGTC 39220 Query 38295 AAGGTTTTCACGAATATCTGCATG 38318 | ||| || ||||| ||||||||| Sbjct 39219 AGGGTCTTGACGAAAATCTGCATG 39196 >seq89 Length=167526 Score = 84.2 bits (92), Expect = 1e-11 Identities = 152/219 (69%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 6187 ATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGC--GCCAAGGTCGAGGG 6244 |||||| ||| |||||||||||| ||||| | | ||| ||||| |||| || Sbjct 31014 ATGTGGAGGATCAATTCTACCGCTACCGCATGCC-CTTGT-TGCAGACCAAGATCGAAGG 31071 Query 6245 TAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGG 6304 | ||| |||||||| || || ||| | ||||||| | || | ||| || || | Sbjct 31072 CAGGGGTAACGGTATCAAGACGGTCGTGCCCAACATGTCCGACATTGCTCGAGCCCTAAG 31131 Query 6305 ACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTT 6364 || ||||| || || || || || | |||||||| |||| | ||||| || ||||| | Sbjct 31132 TCGACCTGCAACGTATCCCACCAAGTTTTTCGGGTTCGAATTGGGCGCGCAAACGCAAGT 31191 Query 6365 TGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCA 6403 || |||| || || || | ||| || || ||| |||| Sbjct 31192 GGACGACAAGAATGATCGATACATTGTGAATGGAGCGCA 31230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334945220148035