Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq318 176 6e-39 >seq318 Length=903324 Score = 176 bits (194), Expect = 6e-39 Identities = 554/854 (65%), Gaps = 6/854 (1%) Strand=Plus/Minus Query 62753 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 62812 ||||||| || || ||||| ||||| | | | | || | || ||||| ||||| Sbjct 24673 GATGCCAAGTTGCAGACGGCAACCTCGTCTGGCGCAGAGTACTCGATGATCTCGGTGCAC 24614 Query 62813 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 62872 || ||||| | ||||||||| || | || | || || ||||| ||| ||||||| Sbjct 24613 AGGTTACTGCTCTTGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTCGCCGCATCC 24554 Query 62873 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 62932 || || || || || || | ||||| || || || | ||| | || || | ||| | Sbjct 24553 TTGTACAGCATAAAGGGGTTGCCAGTCTCGATTTGCGCTTCCAAGATGGCGTACCACAGC 24494 Query 62933 ACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGT 62992 | | ||||| || | ||| | || |||||| | |||| | Sbjct 24493 TTTTGCGCCTTGATGGTGCGCTTGGCGCGACCCTCCGCTTCGTACTTTTCGTACAGCGCT 24434 Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052 || ||||| || || | || | | ||| ||||| || || | || |||||||| | Sbjct 24433 TCAAACTCCTCGCCATAGACTTCGGCCATGCCAGGGCACTCGTTGGGGCACATCAAGCTC 24374 Query 63053 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63112 ||||| |||| | | || || ||||| ||||| || || ||||| || || || Sbjct 24373 CACTCGCCGTTCTGTTCGACACGCTTCATGAAGAGGTCTGGGATCCACAGCGCGTAGAAC 24314 Query 63113 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63172 || || | | || |||||| ||||| |||||| || || |||||| | | | Sbjct 24313 AGCTCGCGTGCTCGCACTTCCTCCTTTCCGTGATTCTTGCGCAGGTCCAGGAACTCGAAA 24254 Query 63173 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63232 || ||||| ||||| || || ||| ||||| | | ||||||| ||||| || || Sbjct 24253 ATGTCAGAGTGCCAGGGCTCGGCGTAGATGGCAAAGGCGCCAGGCCTCTTGTTGCCACCT 24194 Query 63233 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 63292 || || | ||| | || ||||| || | |||| || ||| || | || || ||| Sbjct 24193 TGGTCAACGTAGCGTGCAGTGTTGTTGAAGACTCGCAGCATGGGGACGATGCCGTTGCTA 24134 Query 63293 GTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCT 63352 |||||||| |||| || |||||||| || | ||||| || || || ||| Sbjct 24133 AAGCCATTGGTGCCTGCAATGTAGCTTCCGGTGCCGCGAATGTTGTGGATGCTCAGGCCT 24074 Query 63353 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC-GTATCATAGATGCCCTC 63411 || || || || | || || | ||||| ||| || | || || |||||||| || Sbjct 24073 ATACCACCGGCAGTCTTGCTAATCATGGCGCA-CGTCTTGAGAGTGTCGTAGATGCCGTC 24015 Query 63412 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 63471 || || |||||| ||||| | || || || || | ||| | || || || Sbjct 24014 GATGCTGTCATCCTTCATGCAGACGAGGAAGCACGACGAGAGTTGAGGGTGAGGCGTGCC 23955 Query 63472 CGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGT 63531 || || || | ||| || || ||||| ||||| | ||||| || | || |||||||| Sbjct 23954 GGCGTTGAAGAGGGTCGGGGAGGCGTGGGTAAAGTACTTTTCGGACATGAGGTTGTACGT 23895 Query 63532 CTCAATAGCTGAGTCTATATCCCATTG--ATGAATTCCTACTGCGACACGCATTAACATG 63589 |||||| | || || | | ||| | || || || || ||||| ||||| | |||| Sbjct 23894 CTCAATCACGGAATCGACGT--CATCGCCGTGGATGCCAACGGCGACGCGCATAATCATG 23837 Query 63590 TGCTGAGGTCTTTC 63603 |||||||| | ||| Sbjct 23836 TGCTGAGGACGTTC 23823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633628158606000