Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq275 95.1 1e-14 seq233 89.7 4e-13 seq221 89.7 4e-13 >seq275 Length=588737 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/221 (70%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 24992 CGGAACA--ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTG 25049 ||||||| ||||| || || || ||||| |||| ||||| ||||||| | || || Sbjct 39188 CGGAACAGCATGCAGATTTTCGTCAAGACCCTGACGGGTAAGACCATCACCTTGGAGGTC 39247 Query 25050 GAGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCA 25109 ||||| || ||||| ||||| ||||| || ||| ||||| || || ||||| Sbjct 39248 GAGTCTTCGGACACGATCGACAATGTGAAGGCCAAGATCCAAGACAAGGAGGGAATTCCT 39307 Query 25110 CCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGC 25169 ||||||||||| || | || || || ||||| || | || |||| | ||| || | Sbjct 39308 CCTGACCAACAACGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCAGGACTCTGTCC 39367 Query 25170 GATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || || || || ||| || || | ||||| Sbjct 39368 GACTACAACATCCAGAAGGAGAGCACTCTTCACCTTGTGCT 39408 >seq233 Length=223772 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || | ||||| || | ||||| | || || ||| Sbjct 211473 ATGCAGATCTTTGTCAAAACCCTCACCGGAAAGACGATCACTTTGGAGGTAGAGAGTAGC 211414 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || || | ||| ||| ||| ||||||||||| ||||| ||||| || Sbjct 211413 GATACCATTGACAACGTCAAGGCAAAGATCCAAGACAAAGAAGGCATTCCTCCTGATCAG 211354 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | |||||||| ||||||||| | ||||| | |||||| | ||| ||||| Sbjct 211353 CAACGCCTCATTTTTGCTGGCAAACAACTCGAAGACGGTCGCACCCTTTCCGACTACAAC 211294 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || |||||| || || ||||| Sbjct 211293 ATTCAGAAGGAGAGCACGCTTCACTTGGTGCT 211262 Score = 87.8 bits (96), Expect = 2e-12 Identities = 97/127 (76%), Gaps = 8/127 (6%) Strand=Plus/Minus Query 25022 GACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGA----GTCACTGA 25077 |||||| || ||||||| ||||||| ||||| |||||||| ||||| |||| | Sbjct 211752 GACCGGCAAGACCATCACCCTCGAAGTCGAGTCTTCTGACACCATCGACAACGTCA---A 211696 Query 25078 AGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCG 25137 ||| || | ||| ||||| || || || |||||||||||||| || | || ||||||| Sbjct 211695 AGCCAAGATTCAA-GACAAGGAGGGCATCCCACCTGACCAACAACGCCTCATCTTTGCCG 211637 Query 25138 GCAAACA 25144 | ||||| Sbjct 211636 GTAAACA 211630 >seq221 Length=819827 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| ||||| || || ||||||| | || || ||| || Sbjct 381970 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACCATCACGCTGGAGGTCGAGAGCTCG 382029 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||||||||| || || ||| || ||| ||||| || || ||||| || || | Sbjct 382030 GACACTATCGA--CAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCTCCCGATC 382087 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| | | || ||||| ||||| || | || |||| | || || || |||| Sbjct 382088 AACAAAGATTGATCTTTGCGGGCAAGCAGCTGGAGGATGGAAGGACCCTGTCGGACTACA 382147 Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201 | ||||| || |||||||| || || Sbjct 382148 ACATTCAGAAGGAATCCACTCTCCA 382172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433325438625275