Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq233 183 3e-41 >seq233 Length=223772 Score = 183 bits (202), Expect = 3e-41 Identities = 376/554 (68%), Gaps = 19/554 (3%) Strand=Plus/Plus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| ||||||||||| || | |||||||||||| || || | ||||||| ||| | | Sbjct 43222 GCAGGCAAAGTCGGTGTGAAGACCTTCGTCTCGGGAGATGAGCTCATTGGAGAAGCTCAG 43281 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 || || | ||| || | |||||||||||||| || ||||||||| || || || || Sbjct 43282 TCCCGGCATCAGACCCCTCTTCTTGAGCCAAAAGATGGAAGCAAAAGATCCGGAGAAGAA 43341 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270 || || || ||||| ||||| || | | | |||| || |||| | || Sbjct 43342 GATGCCCTCGACGGCGGCAAAGGCGATCAGTCTCTCGGAGAA------GGAAGATCGTCT 43395 Query 93271 ------GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGT-GTTTCGA 93323 |||||| | | ||||| || || |||| ||| | || || | | || |||| Sbjct 43396 GTCGGAGATCCACCTGAGTGCCCAGTCAGCCTTTTGCTTGA-CCACGGGAATCGTCTCGA 43454 Query 93324 TAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAG 93383 || | ||| | | | |||| || || | || || || || || ||||| | ||||| Sbjct 43455 CGGCATCAAACAAGAACTCTCTCTGCTCTGGTTCGCGGATATAAGTGTCGATGAGCAGAG 43514 Query 93384 AATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTT 93443 | || | || || || | |||||||| |||||||| ||||| || ||||| || | Sbjct 43515 AGTAAGTCTCCGAGTGAATGTTCTCCATCATGATTTGGAAACCGTAAAAGCATCTGGCCT 43574 Query 93444 CCG-TGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCG 93502 | | || | ||||| ||||| || |||| ||| || | || ||||| || || || || Sbjct 43575 CTGCTGCT-TGCACCTCTTGCGAGAATCGCTCCACCAAGTTCTCATTCACGATGCCGTCC 43633 Query 93503 GATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGC--- 93559 || |||||||| || || | | || | ||| || |||||| || || ||| Sbjct 43634 GAAGCTGCAAAGAAGGCGAGCACGTGAGAGACAAAGTGCCTCTCATTGTCGTTGAGCTTG 43693 Query 93560 TTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCT 93619 || |||||||| || || || ||||||| |||||| | |||||||| ||||| Sbjct 43694 TTGTCCCAATCATGCAGGTCCTTGCTGAGATCGATTTCTTCTGCGGTCCAAAAAGATGCC 43753 Query 93620 TCTGCTTTTTTGTA 93633 ||||| || ||||| Sbjct 43754 TCTGCCTTCTTGTA 43767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556857424031400