Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq221 132 4e-26 seq233 127 2e-24 seq318 125 6e-24 seq232 98.7 8e-16 seq275 93.3 4e-14 >seq221 Length=819827 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || || || || || || |||| || || || || | | | Sbjct 381970 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACCATCACGCTGGAGGTCGAGAGCTCG 382029 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || || || ||||||||||||||||| ||||||||| Sbjct 382030 GACACTATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCTCCCGATCAA 382089 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| ||||| ||| | |||||| | ||| | || || |||||| Sbjct 382090 CAAAGATTGATCTTTGCGGGCAAGCAGCTGGAGGATGGAAGGACCCTGTCGGACTACAAC 382149 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || |||||||| | || | || ||||| ||||| || ||| Sbjct 382150 ATTCAGAAGGAATCCACTCTCCACCTCGTGTTGCGTTTGCGTGGCGGT 382197 >seq233 Length=223772 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || ||| | || || || ||| | ||| | || ||||| | || | Sbjct 211245 ATGCAAATTTTCGTGAAGACTCTCACTGGAAAGACGATTACTTTGGAGGTGGAGAGCAGC 211186 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || |||| ||| ||||||||||| ||||| || |||||||| || Sbjct 211185 GATACCATTGACAATGTCAAGGCAAAGATTCAAGACAAAGAGGGCATCCCACCCGACCAG 211126 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || ||||||||||| || | || || ||||| | || || |||||| Sbjct 211125 CAAAGGCTCATCTTTGCCGGCAAGCAACTCGAAGACGGTCGCACGCTTTCTGACTACAAC 211066 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || ||| || | ||||| || | || ||||||| ||| Sbjct 211065 ATCCAGAAGGAAAGTACTCTTCATTTGGTGCTTCGTCTGCGCGGTGGT 211018 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| | ||||| || ||| ||||| | || || || | | | Sbjct 211473 ATGCAGATCTTTGTCAAAACCCTCACCGGAAAGACGATCACTTTGGAGGTAGAGAGTAGC 211414 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | |||| ||| || |||||||| || || ||||| || ||||| Sbjct 211413 GATACCATTGACAACGTCAAGGCAAAGATCCAAGACAAAGAAGGCATTCCTCCTGATCAG 211354 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || ||||| |||||||| | || || |||||| | ||||| |||||| Sbjct 211353 CAACGCCTCATTTTTGCTGGCAAACAACTCGAAGACGGTCGCACCCTTTCCGACTACAAC 211294 Query 22399 ATTCAAAAAGA 22409 ||||| || || Sbjct 211293 ATTCAGAAGGA 211283 Score = 102 bits (112), Expect = 7e-17 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || ||||||||||||| || || | || || | ||| | ||||| Sbjct 212130 ACTGGCAAGACTATCACTCTTGAAGTCGAGTCCTCTGACACTATCGACAACGTCAAAGCC 212071 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || |||||||||||||||||||| || || ||||||||||| || || || ||||| Sbjct 212070 AAGATCCAAGACAAGGAGGGTATTCCCCCTGACCAACAACGTCTCATCTTCGCAGGCAAG 212011 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCA 22403 ||| | || || ||||||| | ||| |||||||| || Sbjct 212010 CAGCTCGAAGACGGCCGCACCTTGAGCGACTACAACATCCA 211970 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||| || ||||| || | | || ||| | ||| | ||||| Sbjct 211751 ACCGGCAAGACCATCACCCTCGAAGTCGAGTCTTCTGACACCATCGACAACGTCAAAGCC 211692 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||||||||||||||| || ||||| || |||||||| || || |||||||| ||| Sbjct 211691 AAGATTCAAGACAAGGAGGGCATCCCACCTGACCAACAACGCCTCATCTTTGCCGGTAAA 211632 Query 22363 CAGTTAGAGGA 22373 ||| | ||||| Sbjct 211631 CAGCTCGAGGA 211621 >seq318 Length=903324 Score = 125 bits (138), Expect = 6e-24 Identities = 463/708 (65%), Gaps = 23/708 (3%) Strand=Plus/Minus Query 129697 ATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCG 129756 || || ||||| |||||||||||| |||| | || |||||||| || |||| | Sbjct 24676 ATGGATGCCAAGTTGCAGACGGCAACCTCGTCTGGCGCAGAGTACTCGATGATCTCGGTG 24617 Query 129757 CACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCA 129816 |||| ||||| | || |||||||||| | ||| || || || || ||| ||| Sbjct 24616 CACAGGTTACTGCTCTTGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTCGCCGCA 24557 Query 129817 TCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCGTTTCGACAATGGTCCTGAAC 129876 || ||||||| ||| | || |||| || |||| ||||| ||| | |||| || Sbjct 24556 TCCTTGTACAGCATAAAGGGGTTGCCAGTCTCGATTTGCGCTTCCAAGATGGCGTACCAC 24497 Query 129877 AAGTCTCGAGCCTTGATC-TGT-CTTACAAATTTGCCACATTTC---TCGTATGCCACAT 129931 | | | | |||||||| || ||| || || | | ||||| | | Sbjct 24496 AGCTTTTGCGCCTTGATGGTGCGCTTGGC-----GCGACCCTCCGCTTCGTACTTTTCGT 24442 Query 129932 ACAGTTGTTCAAATTCTGAGCCGTGTACGGTGTCGA-GCAACGGCGATTCACGCGGACAC 129990 |||| |||||| || ||| | || | | | || | ||| | || || ||| Sbjct 24441 ACAGCGCTTCAAACTCCTCGCCATAGACTTCGGCCATGCCAGGGC-ACTCGTTGGGGCAC 24383 Query 129991 ATCAAACTCCACATTCCATCCGCTTCGACTCGTTTCATAAACAAATCGGGTACCCACAGG 130050 ||||| |||||| || | | |||||| || ||||| || | || || | |||||| Sbjct 24382 ATCAAGCTCCACTCGCCGTTCTGTTCGACACGCTTCATGAAGAGGTCTGGGATCCACAGC 24323 Query 130051 GCGTACAACAAATCTCGCGCTTTTCTATCCTCGGCACCCATGTTACGTTT-CAGTTCAAG 130109 ||||| |||| || || ||| ||||| || || | | | ||| || || Sbjct 24322 GCGTAGAACAGCTCGCGTGCTCGCACTTCCTCCTTTCCG-TGATTCTTGCGCAGGTCCAG 24264 Query 130110 GAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCC---CTTCCG 130166 ||| ||| ||||||| | |||||| || || | || || || | ||||| | || Sbjct 24263 GAACTCGAAAATGTCAGAGTGCCAGGGCTCGGCGTAGATGGCAAAGGCGCCAGGCCTCTT 24204 Query 130167 TTTGCCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACATTGCCTCCAA 130226 ||||| ||||||||||||| ||| | | |||||| ||||||||| ||| | | | Sbjct 24203 GTTGCCACCTTGGTCAACGTAGCGTGCAGTGTTGTTGAAGACTCGCAGCATGGGGACGAT 24144 Query 130227 TCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCC-CGAACGTTATGAA 130285 |||||| ||| || |||| ||||| | || || | ||| |||| ||| || | Sbjct 24143 GCCGTTGCTAAAGCCATTGGTGCCTGCAATGTAGCTTCC-GGTGCCGCGAATGTTGTGGA 24085 Query 130286 CGCTTAGACCTATGCCGCCGCCAAATTTTGAT-ATCAACGCGCA-ATCGCGTAGCGTTTC 130343 ||| || ||||| || ||| | | | ||| | |||| ||||| || | || || || Sbjct 24084 TGCTCAGGCCTATACCACCGGC-AGTCTTGCTAATCATGGCGCACGTCTTG-AGAGTGTC 24027 Query 130344 ATAAATGCCAACGATACTGTCTTCTTTAATGTTTAGGAGGAAACACGA 130391 || ||||| |||| ||||| || || ||| | |||||| ||||| Sbjct 24026 GTAGATGCCGTCGATGCTGTCATCCTTCATGCAGACGAGGAAGCACGA 23979 >seq232 Length=169745 Score = 98.7 bits (108), Expect = 8e-16 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || ||| |||| ||||| ||||| | | || ||| | ||| || |||| Sbjct 23936 ACGGGCAAGACGATCACCCTTGAGGTGGAGTCTTCGGACACCATCGACAATGTCAAGGCC 23995 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||||||||||||||| ||||||||||| ||||| ||||| || ||||| ||||| Sbjct 23996 AAGATTCAAGACAAGGAGGGAATTCCACCCGACCAACAGCGTCTGATCTTTGCAGGCAAG 24055 Query 22363 CAGTTAGAGGAT 22374 || | |||||| Sbjct 24056 CAACTGGAGGAT 24067 >seq275 Length=588737 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | || ||||| || |||| | || || || | | Sbjct 39197 ATGCAGATTTTCGTCAAGACCCTGACGGGTAAGACCATCACCTTGGAGGTCGAGTCTTCG 39256 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || | || || || |||||||||||||| ||||| || || ||| Sbjct 39257 GACACGATCGACAATGTGAAGGCCAAGATCCAAGACAAGGAGGGAATTCCTCCTGACCAA 39316 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || || ||||| ||| | |||||| | | || | ||||| |||||| Sbjct 39317 CAACGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCAGGACTCTGTCCGACTACAAC 39376 Query 22399 ATTCAAAAAGA 22409 || || || || Sbjct 39377 ATCCAGAAGGA 39387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419725519014025