Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq252 131 3e-25 >seq252 Length=544549 Score = 131 bits (144), Expect = 3e-25 Identities = 309/464 (67%), Gaps = 2/464 (0%) Strand=Plus/Minus Query 218582 TGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACC 218641 ||||||| || || |||||| || || || || | |||| |||||||| || | Sbjct 447580 TGGTGGACGGACTGAAGCCAGGTCAACGGAAAGTCATGTTTGGGTGCTTCAAGCGCAAGC 447521 Query 218642 TGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACC 218701 | ||| || ||||| || ||| | ||||||||| || || |||| |||| Sbjct 447520 TCAAGGGAGAGATCAAGGTAGCGCAGCTGGGTGGTTATGTTTCTGAGCACTCTGCTTACC 447461 Query 218702 ATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTG-GGC 218760 ||||||| |||||||| || | ||||||| || | || || |||| | || || Sbjct 447460 ATCACGGAGAGCAGAGCATGTACATGACCATTGTTGGTCTAGCCCAAGACT-TCTGCGGT 447402 Query 218761 AGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGA 218820 || |||||||| ||| | || ||||||||||| || ||| | | | |||| || Sbjct 447401 AGCAACAACATCAACCTCTTGTCGCCCAACGGTCAATTCGGTACGAGATTGATGGGAGGC 447342 Query 218821 AAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTG 218880 || ||| || || || | ||||| || || | ||| | | | ||| | ||| | Sbjct 447341 AAAGATGCGGCCTCGGCTCGTTATATTTTCACTAGCTTGCCTAGCATCACGAGACAGATC 447282 Query 218881 TTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGATTGAG 218940 ||| ||| |||||| || ||||| || || || | || ||||| || ||| Sbjct 447281 TTCCATCCGGCCGACGACAATCTCCTCAATTACCTCAATGATGATGGACAGAGCATCGAG 447222 Query 218941 CCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAATGGTATCGGG 219000 || |||||||| ||||||| | || || ||||| | ||||| | | | || ||||| Sbjct 447221 CCGGAGTGGTACATGCCTGCCGTACCTCTTGTGCTCATCAATGGCGGCGAAGGCATCGGA 447162 Query 219001 ACAGGGTTCAGTACTGACATTCCTTCTTACAATCCCAAGGACAT 219044 || || | || || | ||| |||||||||||||||||| Sbjct 447161 ACGGGATGGAGCTCTTCGTTGCCTAATTACAATCCCAAGGACAT 447118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027830412957885