Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq275 183 6e-41 seq233 161 2e-34 seq232 109 1e-18 seq221 109 1e-18 >seq275 Length=588737 Score = 183 bits (202), Expect = 6e-41 Identities = 163/204 (80%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 68258 GTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTG 68317 ||| || ||| ||| || |||||||| || ||||| || ||||| ||||| || | ||| Sbjct 39400 GTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGCCATCCTCGAGCTG 39341 Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || ||||| ||||| | ||||||||| || ||||| || ||||||||||| ||||| Sbjct 39340 CTTGCCAGCGAAGATGAGACGTTGTTGGTCAGGAGGAATTCCCTCCTTGTCTTGGATCTT 39281 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 ||||| || ||||| ||||| | || || || |||||||||||||| || ||||| Sbjct 39280 GGCCTTCACATTGTCGATCGTGTCCGAAGACTCGACCTCCAAGGTGATGGTCTTACCCGT 39221 Query 68438 GAGGGTCTTGACGAATATCTGCAT 68461 |||||||||||||| |||||||| Sbjct 39220 CAGGGTCTTGACGAAAATCTGCAT 39197 >seq233 Length=223772 Score = 161 bits (178), Expect = 2e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| |||||| ||| || || ||||| || ||||| Sbjct 211247 CCACCACGGAGACGAAGCACCAAGTGAAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAA 211306 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | || || || || || ||||| | ||| || || || ||| Sbjct 211307 AGGGTGCGACCGTCTTCGAGTTGTTTGCCAGCAAAAATGAGGCGTTGCTGATCAGGAGGA 211366 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTAC 68413 |||||||| |||||||| ||||||||||||||| || ||||| || ||| | ||||| Sbjct 211367 ATGCCTTCTTTGTCTTGGATCTTTGCCTTGACGTTGTCAATGGTATC-GCTACTCTCTAC 211425 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||| || ||||| |||||||| ||||| || |||||||| Sbjct 211426 CTCCAAAGTGATCGTCTTTCCGGTGAGGGTTTTGACAAAGATCTGCAT 211473 Score = 156 bits (172), Expect = 8e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || || | ||||| || || || || || |||||||| || || || Sbjct 211019 CCACCGCGCAGACGAAGCACCAAATGAAGAGTACTTTCCTTCTGGATGTTGTAGTCAGAA 211078 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | ||||| ||||| || ||||| ||||| ||||||||||| Sbjct 211079 AGCGTGCGACCGTCTTCGAGTTGCTTGCCGGCAAAGATGAGCCTTTGCTGGTCGGGTGGG 211138 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTAC 68413 ||||| || ||||||||||||||||||||||| || ||||| || |||| | || || Sbjct 211139 ATGCCCTCTTTGTCTTGAATCTTTGCCTTGACATTGTCAATGGTATC-GCTGCTCTCCAC 211197 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || ||||| ||||| ||||| ||||| || ||||| Sbjct 211198 CTCCAAAGTAATCGTCTTTCCAGTGAGAGTCTTCACGAAAATTTGCAT 211245 Score = 116 bits (128), Expect = 7e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 || || || | ||| || ||||| || ||||| | ||||||||| ||||| ||||| ||| Sbjct 211618 CCGTCCTCGAGCTGTTTACCGGCAAAGATGAGGCGTTGTTGGTCAGGTGGGATGCCCTCC 211677 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||||||||| || |||||| ||||||||||| | || || ||||| | |||| Sbjct 211678 TTGTCTTGAATCTTGGCTTTGACGTTGTCGATGGTGTCAGAAGACTCGACTTCGAGGGTG 211737 Query 68424 ATGGTTTTTCCCGT 68437 ||||| || || || Sbjct 211738 ATGGTCTTGCCGGT 211751 Score = 105 bits (116), Expect = 1e-17 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 68277 TGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGT 68336 |||||||| || ||| | || | || ||||| | |||||| || ||||| ||||| Sbjct 211970 TGGATGTTGTAGTCGCTCAAGGTGCGGCCGTCTTCGAGCTGCTTGCCTGCGAAGATGAGA 212029 Query 68337 CTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATG 68396 | ||||||||| || ||||| || ||||||||||| ||||| || |||||| ||||| Sbjct 212030 CGTTGTTGGTCAGGGGGAATACCCTCCTTGTCTTGGATCTTGGCTTTGACGTTGTCGATA 212089 Query 68397 GTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 ||||| | || || ||||| | ||||| || || || || Sbjct 212090 GTGTCAGAGGACTCGACTTCAAGAGTGATAGTCTTGCCAGT 212130 >seq232 Length=169745 Score = 109 bits (120), Expect = 1e-18 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 ||||| || | ||||| || || || || || | ||||||||||||||||| || ||| Sbjct 24069 CCATCCTCCAGTTGCTTGCCTGCAAAGATCAGACGCTGTTGGTCGGGTGGAATTCCCTCC 24010 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||||||||| |||||||| ||||||||||| | || || || || | |||| Sbjct 24009 TTGTCTTGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTG 23950 Query 68424 ATGGTTTTTCCCGTG 68438 || || || |||||| Sbjct 23949 ATCGTCTTGCCCGTG 23935 >seq221 Length=819827 Score = 109 bits (120), Expect = 1e-18 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||||||||| || | || | || | ||| ||||| |||||||| || ||||| Sbjct 381968 CCTCCGCGAAGACGAAGGACGAGATGCAAGGTGCTTTCTTTCTGGATGTTGTAGTCGGAC 381909 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || || ||||| || | |||||| ||||| || || || | ||||||||||| ||| Sbjct 381908 AAAGTTCTGCCATCCTCGAGCTGCTTTCCGGCAAAGATCAGACGCTGTTGGTCGGGAGGA 381849 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGC 68389 ||||| || |||||||| ||||| || ||||| || Sbjct 381848 ATGCCCTCTTTGTCTTGGATCTTGGCTTTGACTGC 381814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921616812664200