Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq318 419 4e-112 seq233 242 7e-59 >seq318 Length=903324 Score = 419 bits (464), Expect = 4e-112 Identities = 1243/1887 (66%), Gaps = 71/1887 (4%) Strand=Plus/Minus Query 243728 TCGGGAGCCACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATG 243787 |||| || ||| ||||||| | || | |||| | | |||| | ||| |||||| || Sbjct 25597 TCGGCAGAGACGGTGAACTGAATGGCGTTGGCGGCAGGCCTGGTGCGCAGATAGTACGTG 25538 Query 243788 CCGGTCTTGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTG 243847 || ||||||||||| | |||| ||| | |||||| | || |||| | || Sbjct 25537 CCCGTCTTGAGTCCCTTCTTCCAGCCGTAAAAGTGCATCGAGGTGAGCTG-TCCA----- 25484 Query 243848 AGCTTTGGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGC 243907 | | | || || | ||| | || ||| | | || || ||| || ||| | Sbjct 25483 AACGTCGG--CGA--TTGCAGATGAAT--GTTCAAGCTTTGACTTTGGCAGATGAATGCT 25430 Query 243908 GCCCGCTCTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAG 243967 | || || || ||||| ||||| ||| || || ||||| || ||||||||||| Sbjct 25429 CCACGATCGGCAGCCATCTCGATGATCGACTTTTGCGAAATCTCCCACACCGTCTTGTAG 25370 Query 243968 ATGGGCTTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATG 244027 | | ||||| ||||| | || | ||| || | ||||| ||| | ||| Sbjct 25369 AGCGCCTTGATCCTGTCGGGTATGCCGGGAACGTTTTGGATGGAGCCGCCATGGGCAATG 25310 Query 244028 AGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGC 244087 | || | |||| || |||||||| ||| |||| | | |||| ||| | Sbjct 25309 ATGCGGTTTTTCATGCCCTCATTCCACAGACCCT---GCTCGACCAGCTCGCGCAGCAAC 25253 Query 244088 CT---GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTG 244144 | ||| || || || |||||||| | |||||| || ||| ||||| |||| || Sbjct 25252 CACGGGTTGACAACTTGGAACTCTCCGGCCAGCACACGACGCGTGTAGATGTTGGATGTG 25193 Query 244145 AGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGC 244204 ||||| | || || || ||| || ||||| | ||| || || |||||||| Sbjct 25192 TAGGGCTCAAAGCATTCGTTGAAGCCGAGAATCTGAGAGGTGGAGGCGGTAGGCATGGGT 25133 Query 244205 GACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTG-AGCTCGTTCCA 244263 | | |||||| ||| | | |||||| || | | | ||| ||| | |||| Sbjct 25132 GCGAGCAGCAGCGAGTTGCGAAGACCGTGC-TCGGAAATCTTGCTCTTCAGCGTGGTCCA 25074 Query 244264 GTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCC 244323 ||||||| | | || |||| ||| |||||||||||| |||||||| || Sbjct 25073 ATCCCACAAGTCAGA-AGGTG--------TGACGCCCCACATGTCGTACTGCAGCTCTCC 25023 Query 244324 CTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACA 244383 |||| | |||| ||| | ||||||| |||||||||||||||| ||||| |||| || Sbjct 25022 CTTGGAGGCGGGCGAGCCTTGGTAGGTCTGGTAGGGACCGTCGCGTTGGGCAAGCTCGCA 24963 Query 244384 -GCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGG 244442 | | | || || ||||||| ||||||||||||||| || |||||| | | ||| | Sbjct 24962 AGAGCGC-TCCAGTGCGGCGTGGTAGATGGTCTCGAAAATTTGCTTGTTGAGCTTGCGCG 24904 Query 244443 CCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGC 244502 | | | || |||| ||||| | |||||||| | |||||||| || ||||| | Sbjct 24903 CTTCGGGCGAGTCAAAGGCCATGCCGAGGATCATGAAAGCATCGGCCAGACCTTGCACTC 24844 Query 244503 CGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGT 244562 ||||||||||||| | ||| || |||||| || || || ||||| || ||| Sbjct 24843 CGATGCCGATGGGACGGTGACGGAAGTTGGAACGACGCGCCTCCTCGACGGGATAGTAGT 24784 Query 244563 TGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCT 244622 || ||||||| | ||| ||||||| ||| | ||||| || || || Sbjct 24783 TGACGTCGATGATGCGGTTCAGGTTGCCACAGATGACCTTTGCGACGGCGTGAAGTTTCT 24724 Query 244623 GAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTG--AGGGC 244680 ||||| |||| | || ||| | || ||| ||| | || ||||| Sbjct 24723 TAAAGTTGTACGACTTGG-----TCGAAG-TGTCGATG------AAC--GATGGCAGGGC 24678 Query 244681 GACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGT 244740 || | |||| |||||||||||| ||||| || | | ||||| || |||||||| Sbjct 24677 GATGGATGCCAAGTTGCAGACGGCAACCTCGTCTGGCGCAGAGTACTCGATGATCTCGGT 24618 Query 244741 GCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGC 244800 ||| |||||||||| ||||||||||||||||| || || ||| |||| ||| || Sbjct 24617 GCACAGGTTACTGCTCTTGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTCGCCGC 24558 Query 244801 GTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCA 244860 |||||||| ||||| ||||| || ||||||| || || | | || | || ||| Sbjct 24557 ATCCTTGTACAGCATAAAGGGGTTGCCAGTCTCGATTTGCGCTTCCAAGATGGCGTACCA 24498 Query 244861 GAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTG-CCCTCTGCCTCGTAGCGGGTGTACA 244919 || | ||||||| || | || | | | ||||| || ||||| ||||| Sbjct 24497 CAGCTTTTGCGCCTTGATGGTGC-GCTTGGCGCGACCCTCCGCTTCGTACTTTTCGTACA 24439 Query 244920 GGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGA 244979 | || || ||||| ||| |||| ||| | | ||| |||||| |||||||| | Sbjct 24438 GCGCTTCAAACTCCTCGCCATAGACTTCGGCCATGCCAGGGCACTCGTTGGGGCACATCA 24379 Query 244980 GACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCT 245039 |||||||||||| | | ||| | || |||||||||||| |||||||| || || | Sbjct 24378 AGCTCCACTCGCCGTTCTGTTCGACACGCTTCATGAAGAGGTCTGGGATCCACAGCGCGT 24319 Query 245040 GGAAGAGGTC-CCTGGTC-CTCTGCTCGTCCGAGCCAGTG-TTCTTCCTCAGCTCCAAAA 245096 ||| || || | || || | || || ||| || ||| ||||| | ||| |||| | Sbjct 24318 AGAACAGCTCGCGTGCTCGCACT--TCCTCCTTTCC-GTGATTCTTGCGCAGGTCCAGGA 24262 Query 245097 AGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGT 245156 | || || | ||| |||||||||||| ||||| || | |||||| |||| ||||| Sbjct 24261 ACTCGAAAATGTCAGAGTGCCAGGGCTCGGCGTAGATGGCAAAGGCGCCAGGCCTCTTGT 24202 Query 245157 TGCCTCCCTGGTCCAC-CATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATG 245215 |||| || ||||| || | | | | | |||||||| ||||| | || || ||| Sbjct 24201 TGCCACCTTGGTCAACGTAGCGTGCAGTG-TTGTTGAAGACTCGCAGCATGGGGACGATG 24143 Query 245216 CCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATG 245275 ||||| ||| |||||||| |||||| || |||| | | |||| |||| Sbjct 24142 CCGTTGCTAAAGCCATTGGTGCCTGCAATGTAGCTTCCGGTGCCGCGAATGTTGTGGATG 24083 Query 245276 GACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCT 245335 || ||||| || ||||| |||| || | |||||| |||||| ||||| Sbjct 24082 CTCAGGCCTATACCACCGGCAGTCTTGCTAATCATGGCGCACGTCTTGAGAGTGTCGTAG 24023 Query 245336 ATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTG 245395 ||||| || |||||||| ||||||| || || ||||| || || || || || | Sbjct 24022 ATGCCGTCGATGCTGTCATCCTTCATGCAGACGAGGAAGCACGACGAGAGTTGAGGGTGA 23963 Query 245396 GGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTC-GAGAGGAA 245454 || ||| | |||||| || || ||| ||||||||||||||| | || || | || Sbjct 23962 GGCGTGCCGGCGTTGAAGAGGGTCGGGGAGGCGTGGGTAAAGTA-CTTTTCGGACATGAG 23904 Query 245455 CCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCACCTCAT 245514 |||||||| | || | |||| || ||||||||||| | |||| | ||| Sbjct 23903 GTTGTACGTCTCAATCACGGAATCGACGTCATCGCCGTGGATGCCAACGGCGACGCGCAT 23844 Query 245515 GAGGGTGTGCTGGGGCGTCTCGATGGGTCCCTCGGGTCCCTTG------AGCATGTAGGA 245568 | ||||||| || || | || | || |||| ||| |||| ||| || Sbjct 23843 AATCATGTGCTGAGG----ACGTTCGG--CGACGCGTCCATTGATGCGAAGCAGGTATGA 23790 Query 245569 GCGCTCGAGCGTCTTGAACCCAAAGTA 245595 ||||| ||||||||||| |||||||| Sbjct 23789 TCGCTCCAGCGTCTTGAAGCCAAAGTA 23763 >seq233 Length=223772 Score = 242 bits (268), Expect = 7e-59 Identities = 411/584 (70%), Gaps = 21/584 (4%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || |||||||| || || || |||||||| || ||||||||| ||| | ||| | Sbjct 43653 CTCGCCTTCTTTGCAGCTTCGGACGGCATCGTGAATGAGAACTTGGTGGAGCGATTCTCG 43594 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 |||||||||| ||||| | ||||| ||||| ||||| || || |||||| Sbjct 43593 CAAGAGGTGCAAGCAGCAGAGGCCAGATGCTTTTACGGTTTCCAAATCATGATGGAGAAC 43534 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAG 42599 | ||||| ||| ||| | ||||||| |||| || |||| || || | || Sbjct 43533 ATTCACTCGGAGACTTACTCT---CTGCTCATCGACACTTATATCCGCGAACCAGAGCAG 43477 Query 42600 CGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGG 42659 | | |||| | ||| | |||||||| ||| ||||| | ||||| |||||| Sbjct 43476 AGAGAGTTCTTGTTTGATGCCGTCGAGACGATTCCCGTGGTCAAGCAAAAGGCTGACTGG 43417 Query 42660 GCGCTCAACTGGATCGA-GAGTCCCGACG--CAACGTTCGGCGAGAGGCTGGTAGCCTTT 42716 || |||| |||||| || | |||| | | ||| |||||| ||| | |||||| Sbjct 43416 GCACTCAGGTGGATCTCCGA---CAGACGATCTTCCTTCTCCGAGAGACTGATCGCCTTT 43360 Query 42717 ACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG 42776 ||||||||||||||||||||||||| || | || || |||||||| ||||||||| || Sbjct 43359 GCCGCCGTCGAGGGCATCTTCTTCTCCGGATCTTTTGCTTCCATCTTTTGGCTCAAGAAG 43300 Query 42777 AAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCT 42835 | || ||| |||||| ||||| | |||||| || || |||||| | | ||||| || || Sbjct 43299 AGGG-GTCTGATGCCGGGACTGAGCTTCTCCAATGAGCTCATCTCCCGAGACGAAGGTCT 43241 Query 42836 GCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCA-CAAGCCC-TCGAAG 42893 || | |||||||||||||| || || || |||||||| | | | |||| || | Sbjct 43240 TCACACCGACTTTGCCTGCCTGCTCTTTTC---CCACCTCAAGAAGCGTGCCCATCCA-- 43186 Query 42894 GAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAG 42953 || |||| | ||||||||| || || || ||||| || |||| |||||| || | Sbjct 43185 GACACGGTCAAGCGCATCATCACCGAAGCTGTCGAGATTGAAAAGGCGTTCCTGACCGAC 43126 Query 42954 TCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTG 42997 | |||||||| || || | ||||||||| | || | ||||| Sbjct 43125 GCACTGCCCGTCTCTTTGATTGGCATGAACGCCAACTTGATGTG 43082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944333474943600