Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq233 143 6e-29 seq275 109 1e-18 seq318 96.9 8e-15 seq252 89.7 1e-12 seq221 89.7 1e-12 >seq233 Length=223772 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || | |||| |||||| || || || || || ||||||| Sbjct 211247 CCACCACGGAGACGAAGCACCAAGTGAAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAA 211306 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| |||||||| | |||||| || || || || || || || ||| | || Sbjct 211307 AGGGTGCGACCGTCTTCGAGTTGTTTGCCAGCAAAAATGAGGCGTTGCTGATCAGGAGGA 211366 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || |||||||| || ||||| || || || ||||| || || | |||||| ||||| Sbjct 211367 ATGCCTTCTTTGTCTTGGATCTTTGCCTTGACGTTGTCAATGGTATCGCTACTCTCTACC 211426 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||||||||| ||||| || || ||||| || |||||||| Sbjct 211427 TCCAAAGTGATCGTCTTTCCGGTGAGGGTTTTGACAAAGATCTGCAT 211473 Score = 87.8 bits (96), Expect = 4e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 288289 TGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGA 288348 ||||| || |||||| | ||||| |||||||| | || || ||||||||||| ||| Sbjct 211970 TGGATGTTGTAGTCGCTCAAGGTGCGGCCGTCTTCGAGCTGCTTGCCTGCGAAGATGAGA 212029 Query 288349 CGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATA 288408 || ||||| | || || || || || || ||||| || ||||| ||||| || ||| Sbjct 212030 CGTTGTTGGTCAGGGGGAATACCCTCCTTGTCTTGGATCTTGGCTTTGACGTTGTCGATA 212089 Query 288409 GAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGT 288449 | || || || ||||| || ||||| ||||| || || Sbjct 212090 GTGTCAGAGGACTCGACTTCAAGAGTGATAGTCTTGCCAGT 212130 >seq275 Length=588737 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || || |||| ||||| || || ||||| || ||||||| || || | || || Sbjct 39408 AGCACAAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGCCATCC 39349 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || || || |||||||| ||||| ||||| | || ||||| || || || Sbjct 39348 TCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCAGGAGGAATTCCCTCCTTGTCT 39289 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| || || ||||| || || || | || || || || || | ||||| ||| Sbjct 39288 TGGATCTTGGCCTTCACATTGTCGATCGTGTCCGAAGACTCGACCTCCAAGGTGATGGTC 39229 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTT 288479 || || ||||| ||||||||||| |||||||| |||| Sbjct 39228 TTACCCGTCAGGGTCTTGACGAAAATCTGCATGCTGTT 39191 >seq318 Length=903324 Score = 96.9 bits (106), Expect = 8e-15 Identities = 287/433 (66%), Gaps = 16/433 (4%) Strand=Plus/Plus Query 348627 TTCGGAATTCTCTGGTGACCGCACTCATGCCGACGGCCTCCACCGCTCAGATCTGTGGAA 348686 |||| || || ||| || ||||| |||||| || ||||||||| ||||||| || Sbjct 25111 TTCGCAACTCGCTGCTGCTCGCACCCATGCCTACCGCCTCCACCTCTCAGATTCTCGGCT 25170 Query 348687 GCGTAGAAGCGTTCGAGCCGATCACCTCTAATTTGTATTCCCGACGTACGTTGGCGGGAG 348746 | ||| || ||||| ||| || || | || | || ||| | |||| |||| Sbjct 25171 TCAACGAATGCTTTGAGCCCTACACATCCAACATCTACACGCGTCGTGTGCTGGCCGGAG 25230 Query 348747 AATTCCCAGTGATCAACTCGTATCTCGTCAGAGAACTCATCGAACGCGGAACATGGAACG 348806 | |||| ||| ||||| ||| | | | || || |||| | || ||||| | Sbjct 25231 AGTTCCAAGTTGTCAACCCGTGGTTGCTGCGCGAGCTGGTCGAGCAGGGTCTGTGGAATG 25290 Query 348807 AACAAATGAAAAATCAAATCATTGCAAATGGTGGCAGCATCCAGAAAGTAATCGGAATTC 348866 | |||||||| | |||||||| |||| ||| |||||| || || ||| || | Sbjct 25291 AGGGCATGAAAAACCGCATCATTGCCCATGGCGGCTCCATCCAAAACGTTCCCGGCATAC 25350 Query 348867 ATCCGAGCG--TGAAGGCCGTGTATAAAACGGCATGGGATCTCTCCATGAAAAG-CG-TG 348922 |||| | | ||||| | || || |||| ||||| | || ||||| || | Sbjct 25351 --CCGACAGGATCAAGGCGCTCTACAAGACGGTGTGGGAGATTTCGC--AAAAGTCGATC 25406 Query 348923 ATCGATATGGCGTCGGATCGTGGAGCATTCGTGGACCAGACACAAAGCATGAATCTGTTT 348982 ||||| ||||| | ||||||||||||||| | ||| | |||||| |||| | | Sbjct 25407 ATCGAGATGGCTGCCGATCGTGGAGCATTCATCTGCCAAAGTCAAAGCTTGAACATTCAT 25466 Query 348983 CTCGCCCAA---CCAAC-ATTGAAGAACGTGACGTCCATGCTCTTCTACGGATGGAAGAG 349038 || ||| || || ||| | | | | || || |||| ||| ||||| ||||||| Sbjct 25467 CT---GCAATCGCCGACGTTTGGACAGC-TCACCTCGATGCACTTTTACGGCTGGAAGAA 25522 Query 349039 TGGACTCAAGACG 349051 |||||||||||| Sbjct 25523 GGGACTCAAGACG 25535 >seq252 Length=544549 Score = 89.7 bits (98), Expect = 1e-12 Identities = 658/1027 (64%), Gaps = 74/1027 (7%) Strand=Plus/Plus Query 325342 ATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTT 325401 ||| || || ||| |||||||| |||||| || || | ||| |||| ||||||||| Sbjct 447336 ATCTTTGCCTCCCATCAATCTCGTACCGAATTGACCGTTGGGCGACAAGAGGTTGATGTT 447395 Query 325402 ATTGCTTCCGACATAA-TCCTGTGCAAGGTTCACGATGGTCCCTTGCA-GAGATGCTTCG 325459 ||||| ||| || || || || || || || |||||| | || | |||| | Sbjct 447396 GTTGCTACCG-CAGAAGTCTTGGGCTAGACCAACAATGGTCATGTACATGCTCTGCT-CT 447453 Query 325460 CCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACGTCG 325519 || || || || || ||||| | ||| ||||| | | ||| || ||||| | || Sbjct 447454 CCGTGATGGTAAGCAGAGTGCTCAGAAACATAACCACCCAGCTGCGCTACCTTGATCTCT 447513 Query 325520 GTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGGTTTGAAACCA 325579 | | | ||||||||||| | | || |||||||||||| || || | || Sbjct 447514 CCCTTGAGCTTGCGCTTGAAGCACCCAAACATGACTTTCCGTTGACCTGGCTTCAGTCCG 447573 Query 325580 TCAACGACCGACGGAATGCTTCGTTCCAGATCGTACCGC----GAGAACAAAATAAGTTC 325635 || || | || |||||| || | || || | || |||||||| || || || Sbjct 447574 TCCACCAAAGAAGGAATGGATCTGAC---ATTGT-CTGCCATGGAGAACAAGATGAGCTC 447629 Query 325636 CTTGTCGATGAAGTCGGGAACGGGAACCTCGGGCTTCTTGTGGTCAAGTTGATTTCCTGG 325695 ||||| || ||||| | | ||| || | | |||||||| || | | |||| || Sbjct 447630 CTTGTTGACAAAGTCCGCTAAGGGTACGCTGTTGATGTTGTGGTCCAGATAAGTTCCAGG 447689 Query 325696 TTCGTA-TGCCGTCATCCACTCCTTGCGATCCTCGGC--TCGTGACTTGTTGAAAGAACG 325752 | | | |||| ||| |||||| || ||||| || || || | |||||||| | | Sbjct 447690 TCTGAACTGCC-TCAGCCACTCTTTACGATCATCTGCCTTCTTT--TTGTTGAACGCGAG 447746 Query 325753 GTCAATGAGCTCTCCGGAATCGGAAGTCCACAT------AAACGTCTTCATGAGAGACTT 325806 |||||||||| | |||| ||| | | ||| || | |||| | | Sbjct 447747 GTCAATGAGCGC-CCGG--TCGCTATCCTGCATGGCATCGAAGGGTAGCATGTGCTTGTC 447803 Query 325807 CAGATTGCTGAAGTATTTTTTGGCAT-CTGCACTGGAACTCGTACCAAGCCCCTTAAAAT 325865 || |||||||| || ||||||| ||| | ||||| ||||| || ||||| | | Sbjct 447804 CATCGCTCTGAAGTACTTCTTGGCATCCTGGGC-CGAACTGGTACCCAGACCCTTGTAGT 447862 Query 325866 ACTTGGT----CGTCCATT----TCTTCATATCTTGTGTCTTCACGAAGTCT-TCGAAGT 325916 ||||| | | ||| || || ||| ||| | | | || ||| ||| | | Sbjct 447863 ACTTGATGACCCATCCCTTGCCGTCCGCAT-TCTCCTCTTTCCA-----TCTCTCGTACT 447916 Query 325917 CAGGAAGACTGAAAAA----TTCTCTGACTTCTTTTCCCTTCCTGGCAACT-ACGATAGG 325971 | |||| |||| || ||||| || | || ||||| | ||| | ||||| || Sbjct 447917 CTGGAATGGTGAAGAAGGATTTCTC---CTGC-TTCCCCTTTGT-GCACTTGACGATGGG 447971 Query 325972 CGTGATGAACTTCTTCAAGAACCCTGGAATTTCTAGAA-GATTAGGGA-AACAGCTATGG 326029 ||||||||||| | | ||| || | || || || | ||||| || || | Sbjct 447972 CGTGATGAACTCGATGAGGAATCCAG--CTTGCTTCAACAACGAGGGATAAAAGTGGTCC 448029 Query 326030 AAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTCATGATC 326089 |||||||| |||| |||||| ||||| | ||||| || || ||||||||| Sbjct 448030 AAAAAGTTGATGATGAGACCCTTGATGTGCGAACCGTCGTGGTCTTGATCCGTCATGATC 448089 Query 326090 ATCACATGACCGTAACGAAGCGAG--GACGTGTCT-TTGTACACTTTACCGGTTTGAAGG 326146 |||| | || || || |||||| |||| || ||||| || || | ||| ||| Sbjct 448090 ATCAGCTTTCCATATCGTAGCGAGTCGACG---CTATTGTAGACCTTGTTGTGTTGCAGG 448146 Query 326147 CCGAGAATTTGTTTGAGCGCTGTGATTTCT-TCG---TTCTTCGTGATGCTTGCCACGGA 326202 || | ||| |||| ||||| | | ||| |||||| |||| | || | || Sbjct 448147 CCCAAAATCGTCTTGA----TGTGACTGATCTCGGTATTCTTCATGAT-CATGTCGTGGC 448201 Query 326203 T-GCATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGAC 326261 | || ||||| || || | || || ||||| | ||||| ||||| || | ||||| | Sbjct 448202 TCGCGTCGCGCACATTGAGCAGCTTACCACGCAATGGGAATACTCCGTAGTTGTCGCGGC 448261 Query 326262 CGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAATGA 326321 | || | || || | | ||||| | | |||||||| || || || ||||||| Sbjct 448262 CCACTTCACTTAGACCGGACACGGCAAGCGCCTTGGCGGAATCTCCTTCAGTGAGAATGA 448321 Query 326322 GAGTGCA 326328 | ||||| Sbjct 448322 GGGTGCA 448328 >seq221 Length=819827 Score = 89.7 bits (98), Expect = 1e-12 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| || | ||| |||||||| | ||||||||||| ||||| || ||||||| Sbjct 381968 CCTCCGCGAAGACGAAGGACGAGATGCAAGGTGCTTTCTTTCTGGATGTTGTAGTCGGAC 381909 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | || || || | || ||||| || ||||||||||||||||| || Sbjct 381908 AAAGTTCTGCCATCCTCGAGCTGCTTTCCGGCAAAGATCAGACGCTGTTGGTCGGGAGGA 381849 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 || || ||||| || ||||| || ||||| || Sbjct 381848 ATGCCCTCTTTGTCTTGGATCTTGGCTTTGAC 381817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179647069553830