Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq252 104 5e-17 seq254 93.3 9e-14 >seq252 Length=544549 Score = 104 bits (114), Expect = 5e-17 Identities = 821/1287 (64%), Gaps = 86/1287 (7%) Strand=Plus/Plus Query 297209 TCTTCTCCAGCAATCAATCGCTTCACGTTGTCTACGATGTCTTTTGGATTGTAACTAGGG 297268 ||||| || || ||| ||| | |||| | || ||||| || ||||||||| |||| Sbjct 447082 TCTTCACCGGCCATCCTTCGGCGAAGGTTGGCGACTATGTCCTTGGGATTGTAATTAGGC 447141 Query 297269 ATATTAGTCGACCAACCGGTACCGATTCCACTCGAA-CCATTCACCAGAATGCTCGGAAT 297327 | || ||| || || ||||| || ||| ||||| | || | || | Sbjct 447142 AACGAAGAGCTCCATCCCGTTCCGATGCCT-TCGCCGCCATTGATGAGCACAAGAGGTAC 447200 Query 297328 AACAGGCACATAATACTCTGGTTCGATCTTGTCACCGTCATCATACAGATATTTCAGAAG 297387 |||||| || |||| || ||||| | | || ||||||| || || || || || Sbjct 447201 GGCAGGCATGTACCACTCCGGCTCGATGCTCTGTCCATCATCATTGAGGTAATTGAGGAG 447260 Query 297388 ATTATCGTC---CGTATCGACGAAAACCTGTCGAGTCTGAGGGTT--CAGTTTTGTGAAA 297442 ||| ||||| || || || || ||||| || || | | || | |||||| Sbjct 447261 ATTGTCGTCGGCCGGATGGAAGAT---CTGTCTCGT--GATGCTAGGCAAGCTAGTGAAA 447315 Query 297443 ATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCC 297502 ||||| || || || ||| || || ||| |||||||| |||||| || || | Sbjct 447316 ATATAACGAGCCGAGGCCGCATCTTTGCCTCCCATCAATCTCGTACCGAATTGACCGTTG 447375 Query 297503 GGCAACAACCAGTTGATGTTATTGCTTCCGACATAA-TCCTGTGCAAGGTTCACGATGGT 297561 ||| |||| ||||||||| ||||| ||| || || || || || || || ||||| Sbjct 447376 GGCGACAAGAGGTTGATGTTGTTGCTACCG-CAGAAGTCTTGGGCTAGACCAACAATGGT 447434 Query 297562 CCCTTGCA-GAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGA 297620 | | || | ||| || || || || || || ||||| | ||| ||||| | | Sbjct 447435 CATGTACATGCTCTGC-TCTCCGTGATGGTAAGCAGAGTGCTCAGAAACATAACCACCCA 447493 Query 297621 ACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCC 297680 ||| || ||||| | || | | | ||||||||||| | | || ||||||| Sbjct 447494 GCTGCGCTACCTTGATCTCTCCCTTGAGCTTGCGCTTGAAGCACCCAAACATGACTTTCC 447553 Query 297681 GTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGATCGTACCGC- 297739 ||||| || || | || || || | || |||||| || | || || | || Sbjct 447554 GTTGACCTGGCTTCAGTCCGTCCACCAAAGAAGGAATGGATC---TGACATTGT-CTGCC 447609 Query 297740 ---GAGAACAAAATAAGTTCCTTGTCGATGAAGTCGGGAACGGGAACCTCGGGCTTCTTG 297796 |||||||| || || ||||||| || ||||| | | ||| || | | ||| Sbjct 447610 ATGGAGAACAAGATGAGCTCCTTGTTGACAAAGTCCGCTAAGGGTACGCTGTTGATGTTG 447669 Query 297797 TGGTCAAGTTGATTTCCTGGTTCGTA-TGCCGTCATCCACTCCTTGCGATCCTCGGC--T 297853 ||||| || | | |||| ||| | | |||| ||| |||||| || ||||| || || | Sbjct 447670 TGGTCCAGATAAGTTCCAGGTCTGAACTGCC-TCAGCCACTCTTTACGATCATCTGCCTT 447728 Query 297854 CGTGACTTGTTGAAAGAACGGTCAATGAGCTCTCCGGAATCGGAAGTCCACAT------A 297907 | | |||||||| | ||||||||||| | |||| ||| | | ||| Sbjct 447729 CTT--TTTGTTGAACGCGAGGTCAATGAGCGC-CCGG--TCGCTATCCTGCATGGCATCG 447783 Query 297908 AACGTCTTCATGAGAGACTTCAGATTGCTGAAGTATTTTTTGGCAT-CTGCACTGGAACT 297966 || | |||| | | || |||||||| || ||||||| ||| | ||||| Sbjct 447784 AAGGGTAGCATGTGCTTGTCCATCGCTCTGAAGTACTTCTTGGCATCCTGGGC-CGAACT 447842 Query 297967 CGTACCAAGCCCCTTAAAATACTTGGT----CGTCCATT----TCTTCATATCTTGTGTC 298018 ||||| || ||||| | |||||| | | ||| || || ||| ||| | | Sbjct 447843 GGTACCCAGACCCTTGTAGTACTTGATGACCCATCCCTTGCCGTCCGCAT-TCTCCTCTT 447901 Query 298019 TTCACGAAGTCT-TCGAAGTCAGGAAGACTGAAAAA----TTCTCTGACTTCTTTTCCCT 298073 | || ||| ||| | || |||| |||| || ||||| || | || |||| Sbjct 447902 TCCA-----TCTCTCGTACTCTGGAATGGTGAAGAAGGATTTCTC---CTGC-TTCCCCT 447952 Query 298074 TCCTGGCAACT-ACGATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCTAGAA-G 298131 | | ||| | ||||| ||||||||||||| | | ||| || | || || || Sbjct 447953 TTGT-GCACTTGACGATGGGCGTGATGAACTCGATGAGGAATCCAG--CTTGCTTCAACA 448009 Query 298132 ATTAGGGA-AACAGCTATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAA 298190 | ||||| || || | |||||||| |||| |||||| ||||| | ||||| Sbjct 448010 ACGAGGGATAAAAGTGGTCCAAAAAGTTGATGATGAGACCCTTGATGTGCGAACCGTCGT 448069 Query 298191 CATCCGCGTCGGTCATGATCATCACATGACCGTAACGAAGCGAG--GACGTGTCT-TTGT 298247 || || ||||||||||||| | || || || |||||| |||| || |||| Sbjct 448070 GGTCTTGATCCGTCATGATCATCAGCTTTCCATATCGTAGCGAGTCGACG---CTATTGT 448126 Query 298248 ACACTTTACCGGTTTGAAGGCCGAGAATTTGTTTGAGCGCTGTGATTTCT-TCG---TTC 298303 | || || | ||| ||||| | ||| |||| ||||| | | ||| ||| Sbjct 448127 AGACCTTGTTGTGTTGCAGGCCCAAAATCGTCTTGA----TGTGACTGATCTCGGTATTC 448182 Query 298304 TTCGTGATGCTTGCCACGGAT-GCATCGCGGACATTCAATAGTTTTCCACGAAGAGGGAA 298362 ||| |||| | || | || | || ||||| ||||| | || || ||||| | ||||| Sbjct 448183 TTCATGAT-CATGTCGTGGCTCGCGTCGCGCACATTGAGCAGCTTACCACGCAATGGGAA 448241 Query 298363 CACTCCATATCTCTCGCGACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGA 298422 ||||| || | ||||| || || | || || | | ||||| | | ||||| Sbjct 448242 TACTCCGTAGTTGTCGCGGCCCACTTCACTTAGACCGGACACGGCAAGCGCCTTGGCGGA 448301 Query 298423 ATCCCCCTCCGTCAGAATGAGAGTGCA 298449 ||| || || || |||||||| ||||| Sbjct 448302 ATCTCCTTCAGTGAGAATGAGGGTGCA 448328 >seq254 Length=1514893 Score = 93.3 bits (102), Expect = 9e-14 Identities = 173/254 (68%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 334101 ATGAAGTCAATGATAGCCATGTTAGAATCGGACCCGTCGAGATCGTGTTCCACGTAAGCA 334160 |||||||||| || | |||| | || || |||||||||||||| || ||||| Sbjct 597344 ATGAAGTCAAGAATGGAGATGTCACCCTCAGATCCGTCGAGATCGTGCTCAACGTACCAG 597285 Query 334161 GTTTTCAAAACATCCGCAGAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATC 334220 || | | || | ||| ||||| || |||| |||||||||| || || |||||| Sbjct 597284 GTGCGGACCTCCTCGGGAGAAGGGAAACCCTCAACCTGACCGTTCTGGATGGCACGCATC 597225 Query 334221 AGAGTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGA 334280 | || || || || | ||||| | || || ||||| ||||||| ||||||||| | Sbjct 597224 AAGGTGGACTTGCCAGATCCGTTACGGCCGCAAAGACCATAGCGGTGGGCACGCTTCAAA 597165 Query 334281 TTGAACCGCGTATTGTTCAGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCA 334340 || | |||| || || || || |||| ||||| ||||| |||| ||| | Sbjct 597164 CGCAAGGTGGCGGTGTTGAGCAGGATCTTGGCACCGTATGCGAGAGAGAATTGACAGTTG 597105 Query 334341 CACAGATCCTCACC 334354 || || || || || Sbjct 597104 CAAAGGTCTTCGCC 597091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102873146634750