Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq318 120 4e-22 seq233 116 4e-21 >seq318 Length=903324 Score = 120 bits (132), Expect = 4e-22 Identities = 545/855 (64%), Gaps = 13/855 (2%) Strand=Plus/Minus Query 114464 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 114523 || |||||||| || |||| || || || | ||| || ||| |||||| || Sbjct 24685 GGCAGGGCGATGGATGCCAAGTTGCAGACGGCAACCTCGTCTGGCGCAGAGTACTCGATG 24626 Query 114524 ATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 114583 || || || |||| || ||||| |||||||||| |||||| || || ||| | Sbjct 24625 ATCTCGGTGCACAGGTTACTGCTCTTGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGG 24566 Query 114584 TTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 114643 || |||||||||||| ||||| | || | || ||||| |||| | | | || Sbjct 24565 TTCGCCGCATCCTTGTACAGCATAAAGGGGTTGCCAGTCTCGATTTGCGCTTCCAAGATG 24506 Query 114644 GCCTTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTT 114702 || | ||| | | | ||| || | | ||| ||||| || |||||| | |||||||| Sbjct 24505 GCGTACCACAGCTTTTGCGCCTTG-ATGGTGCGCTTGGCGCGACCCTCCGCTTCGTACTT 24447 Query 114703 TGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGG 114762 | ||| || ||||||||||| || || | | || | | || || || | || Sbjct 24446 TTCGTACAGCGCTTCAAACTCCTCGCCATAGACTTCGGCCATGCCAGGGCACTCGTTGGG 24387 Query 114763 GCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCA 114822 ||| | | ||| | || || || ||||||||||||||||||||||||||||| Sbjct 24386 GCACATCAAGCTCCACTCGCCGTTCTGTTCGACACGCTTCATGAAGAGGTCTGGGATCCA 24327 Query 114823 GAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTC 114882 || || |||| || || || || |||| || | || ||||| |||| || Sbjct 24326 CAGCGCGTAGAACAGCTCGCGTGCTCGCACTTCCTCCTTTCCGTGATTCTTGCGCAGGTC 24267 Query 114883 CAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG----ACCCCT 114938 || || || | || || | |||||| || || ||| | || | | | ||| Sbjct 24266 CAGGAACTCGAAAATGTCAGAGTGCCAGGGCTCGGCGTAGATGGCAAAGGCGCCAGGCCT 24207 Query 114939 TACGACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAA 114998 | | ||| | |||| || || | || ||| || || || || ||||| || | Sbjct 24206 CTTGTTG-CCACCTTGGTCAACGTAGCGTGCAGTGTTGTTGAAGACTCGCAGCATGGGGA 24148 Query 114999 TGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTT--ATTGGCTCTGACATC 115056 ||| || | |||||| || || ||| | ||| || | | | | Sbjct 24147 CGATGCCGTTGCTAAAGCCATTGGTGCCTGCAAT--GTAGCTTCCGGTGCCGCGAATGTT 24090 Query 115057 ATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACT 115116 |||||| || || ||||| || || ||| || |||||| | ||||| | Sbjct 24089 GTGGATGCTCAGGCCTATACCACCGGCAGTCTTGCTAATCATGGCGCACGTCTTGAGAGT 24030 Query 115117 GCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTG 115176 | ||||||| |||||||| |||| |||| | || |||||||| ||| | ||| Sbjct 24029 GTCGTAGATGCCGTCGATGCTGTCATCCTTCATGCAGACGAGGAAGCACGACGAGAGTTG 23970 Query 115177 TGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATAC-CTTGGG 115235 || || || || |||||||||||||| || | |||||| | || ||| || || Sbjct 23969 AGGGTGAGGCGTGCCGGCGTTGAAGAGGGTCGGGGAGGCGTGGGT-AAAGTACTTTTCGG 23911 Query 115236 ACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGA 115295 |||| | ||| ||||| | |||| | ||| || ||||| || || | | || Sbjct 23910 ACATGAGGTTGTACGTCTCAATCACGGAATCGACGTCATCGCCGTGGATGCCAACGGCGA 23851 Query 115296 CCCGCATAAACATGT 115310 | ||||||| ||||| Sbjct 23850 CGCGCATAATCATGT 23836 >seq233 Length=223772 Score = 116 bits (128), Expect = 4e-21 Identities = 103/129 (80%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 |||||| || ||| ||||| ||||| ||||||||||| ||||| ||||||| |||||| Sbjct 43225 GGCAAAGTCGGTGTGAAGACCTTCGTCTCGGGAGATGAGCTCATTGGAGAAGCTCAGTCC 43284 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 ||||| ||||||| |||||| | ||| || || | | ||| || || ||||||||||| Sbjct 43285 CGGCATCAGACCCCTCTTCTTGAGCCAAAAGATGGAAGCAAAAGATCCGGAGAAGAAGAT 43344 Query 126166 TCCCTCCAC 126174 ||||| || Sbjct 43345 GCCCTCGAC 43353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597349978543800