Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18]
485 sequences; 26,090,089 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq275 95.1 1e-14
seq221 89.7 6e-13
seq233 87.8 2e-12
>seq275
Length=588737
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 42012 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 42071
||||||||||| || || ||||| || | |||||||| | || || |||||||| |||
Sbjct 39393 GTGCTCTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGCCATCCTCGAGCTGCTTGCCA 39334
Query 42072 GCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 42131
||||| ||||| || || ||||| | || | | ||||||||| ||| || ||
Sbjct 39333 GCGAAGATGAGACGTTGTTGGTCAGGAGGAATTCCCTCCTTGTCTTGGATCTTGGCCTTC 39274
Query 42132 AGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTC 42191
| | | | |||||| || || || || | |||||||| || ||||| || |||
Sbjct 39273 ACATTGTCGATCGTGTCCGAAGACTCGACCTCCAAGGTGATGGTCTTACCCGTCAGGGTC 39214
Query 42192 TTTACAAAGATTTGCAT 42208
|| || || || |||||
Sbjct 39213 TTGACGAAAATCTGCAT 39197
>seq221
Length=819827
Score = 89.7 bits (98), Expect = 6e-13
Identities = 153/221 (69%), Gaps = 6/221 (3%)
Strand=Plus/Minus
Query 41991 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 42050
||||||||||| | || | ||| ||||| ||||| ||||| || | ||| ||||
Sbjct 382187 AAACGCAACACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCCGACAGGGTCCTT 382128
Query 42051 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCC 42110
| || || |||||||| || || || || | || || || |||| || | | ||||
Sbjct 382127 CCATCCTCCAGCTGCTTGCCCGCAAAGATCAATCTTTGTTGATCGGGAGGAATACCCTCC 382068
Query 42111 TTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACC 42167
|||||| ||| || |||| | | | ||||| |||| || || || | |
Sbjct 382067 TTGTCCTGGATCTTGGCCTTGACATTGTCGATAGTGTCCGAGCTC---TCGACCTCCAGC 382011
Query 42168 GTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|||||||| ||||| || | ||||| ||||||||||||||
Sbjct 382010 GTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 381970
>seq233
Length=223772
Score = 87.8 bits (96), Expect = 2e-12
Identities = 151/217 (70%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||| | |||||| || | ||||||||||| ||||| ||||| || | || || || |
Sbjct 211258 ACGAAGCACCAAGTGAAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGACC 211317
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
||| || || || || ||||| || ||||| || ||||| || | || | || || ||
Sbjct 211318 GTCTTCGAGTTGTTTGCCAGCAAAAATGAGGCGTTGCTGATCAGGAGGAATGCCTTCTTT 211377
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171
||| ||| ||| |||| ||| | | | || ||||| || || || | ||||
Sbjct 211378 GTCTTGGATCTTTGCCTTGA-CGTTGTCAATGGTATCGCTACTCTCTACCTCCAAAGTGA 211436
Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
| || || || || || || || |||||||| |||||
Sbjct 211437 TCGTCTTTCCGGTGAGGGTTTTGACAAAGATCTGCAT 211473
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543209506772400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |