Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq275 95.1 1e-14 seq221 89.7 6e-13 seq233 87.8 2e-12 >seq275 Length=588737 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 42012 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 42071 ||||||||||| || || ||||| || | |||||||| | || || |||||||| ||| Sbjct 39393 GTGCTCTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGCCATCCTCGAGCTGCTTGCCA 39334 Query 42072 GCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 42131 ||||| ||||| || || ||||| | || | | ||||||||| ||| || || Sbjct 39333 GCGAAGATGAGACGTTGTTGGTCAGGAGGAATTCCCTCCTTGTCTTGGATCTTGGCCTTC 39274 Query 42132 AGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTC 42191 | | | | |||||| || || || || | |||||||| || ||||| || ||| Sbjct 39273 ACATTGTCGATCGTGTCCGAAGACTCGACCTCCAAGGTGATGGTCTTACCCGTCAGGGTC 39214 Query 42192 TTTACAAAGATTTGCAT 42208 || || || || ||||| Sbjct 39213 TTGACGAAAATCTGCAT 39197 >seq221 Length=819827 Score = 89.7 bits (98), Expect = 6e-13 Identities = 153/221 (69%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 41991 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 42050 ||||||||||| | || | ||| ||||| ||||| ||||| || | ||| |||| Sbjct 382187 AAACGCAACACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCCGACAGGGTCCTT 382128 Query 42051 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCC 42110 | || || |||||||| || || || || | || || || |||| || | | |||| Sbjct 382127 CCATCCTCCAGCTGCTTGCCCGCAAAGATCAATCTTTGTTGATCGGGAGGAATACCCTCC 382068 Query 42111 TTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACC 42167 |||||| ||| || |||| | | | ||||| |||| || || || | | Sbjct 382067 TTGTCCTGGATCTTGGCCTTGACATTGTCGATAGTGTCCGAGCTC---TCGACCTCCAGC 382011 Query 42168 GTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||||||| ||||| || | ||||| |||||||||||||| Sbjct 382010 GTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 381970 >seq233 Length=223772 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| || | ||||||||||| ||||| ||||| || | || || || | Sbjct 211258 ACGAAGCACCAAGTGAAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGACC 211317 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || || || || ||||| || ||||| || ||||| || | || | || || || Sbjct 211318 GTCTTCGAGTTGTTTGCCAGCAAAAATGAGGCGTTGCTGATCAGGAGGAATGCCTTCTTT 211377 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 ||| ||| ||| |||| ||| | | | || ||||| || || || | |||| Sbjct 211378 GTCTTGGATCTTTGCCTTGA-CGTTGTCAATGGTATCGCTACTCTCTACCTCCAAAGTGA 211436 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || || || || || || |||||||| ||||| Sbjct 211437 TCGTCTTTCCGGTGAGGGTTTTGACAAAGATCTGCAT 211473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543209506772400