Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq318 279 5e-70 >seq318 Length=903324 Score = 279 bits (308), Expect = 5e-70 Identities = 1108/1714 (65%), Gaps = 46/1714 (3%) Strand=Plus/Plus Query 93724 TACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCC 93783 ||||||| |||||| || |||||| || ||||| || || |||| | || || Sbjct 23763 TACTTTGGCTTCAAGACGCTGGAGCGATCATACCTGCTTCGCATCAATGGACGCGTCGCC 23822 Query 93784 GAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATGCCG 93843 || || || || || || | |||||||||||| | || || |||||| | ||| | || Sbjct 23823 GAACGTCCTCAGCACATGATTATGCGCGTCGCCGTTGGCATCCACGGCGATGACGT--CG 23880 Query 93844 AAT--GTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCCACCCCGA 93901 | | || | | | | || |||| || ||| | |||| ||| |||||| Sbjct 23881 ATTCCGTGATTGAGACGTACAACCTCATGTCCGAAAAGTACTTTACCCACGCCTCCCCGA 23940 Query 93902 CCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACGAACA 93961 |||| |||||||| || || || || || | || ||||| ||||| | | | Sbjct 23941 CCCTCTTCAACGCCGGCACGCCTCACCCTCAACTCTCGTCGTGCTTCCTCGTCTGCATGA 24000 Query 93962 AGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAA--A 94019 ||| ||| |||| ||| || | ||||| |||||| || ||||| |||| | | Sbjct 24001 AGGATGACAGCATCGACGGCATCTACGACACTCTCAAG-AC-GTGCG-CCATGATTAGCA 24057 Query 94020 ATAC-GCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCC 94078 | || || || || || || | || ||||| || | || | || || |||||| Sbjct 24058 AGACTGCCGGTGGTATAGGCCTGAGCATCCACAACATTCGCGGCACCGGAAGCTACATTG 24117 Query 94079 GCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGG 94138 || ||||||||| ||||||| ||||||| ||||| || |||||||||||| | | Sbjct 24118 CAGGCACCAATGGCTTTAGCAACGGCATCGTCCCCATGCTGCGAGTCTTCAACAACACTG 24177 Query 94139 CGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGC 94198 | |||||||| ||||| ||||| | |||| || | || || |||| ||||| Sbjct 24178 CACGCTACGTTGACCAAGGTGGCAACAAGAGGCCTGGCGCCTTTGCCATCTACGCCGAGC 24237 Query 94199 CCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGG 94258 |||||||| | ||| | | ||| | |||||||| ||||| ||||| || || | Sbjct 24238 CCTGGCACTCTGACATTTTCGAGTTCCTGGACCTGCGCAAGAATCACGGAAAGGAGGAAG 24297 Query 94259 AGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCG 94318 | | || | || || |||||||| || ||| | |||||||| || ||||| || |||| Sbjct 24298 TGCGAGCACGCGAGCTGTTCTACGCGCTGTGGATCCCAGACCTCTTCATGAAGCGTGTCG 24357 Query 94319 AGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTT 94378 | | ||| || ||||| | | || ||||| || || || || || |||| || | Sbjct 24358 AACAGAACGGCGAGTGGAGCTTGATGTGCCCCAACGAGTGCCCTGGCATGGCCGAAGTCT 24417 Query 94379 GTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAGGAAGG 94438 ||| | ||||||| |||| | |||||| || |||| |||| | Sbjct 24418 ATGGCGAGGAGTTTGAAGCGCTGTACGAAAAGTACGAAGCGGAGGGTCGCGCCAAGCGCA 24477 Query 94439 TTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGC 94498 || | || ||||||||| | ||| |||| | || | ||||| || | | Sbjct 24478 CCATCAAGGCGCAAAAGCTGTGGTACGCCATCTTGGAAGCGCAAATCGAGACTGGCAACC 24537 Query 94499 CCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGA 94558 ||| || ||| |||||| | | ||| |||| ||||||| || |||| || | Sbjct 24538 CCTTTATGCTGTACAAGGATGCGGCGAACCGCAAGAGCAACCAGAAGAACCTGGGCACCA 24597 Query 94559 TCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTG 94618 |||||||| || |||||||||||||| ||||||| || | || |||||| |||| | Sbjct 24598 TCAAGAGCAGTAACCTGTGCACCGAGATCATCGAGTACTCTGCGCCAGACGAGGTTGCCG 24657 Query 94619 TGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACGTCTACTG 94678 | || ||| ||| |||||| |||| ||| |||| | || | |||| || || Sbjct 24658 TCTGCAACTTGGCATCCATCGCCCTG-CCA---TCGTTC---AT--CGACACTTCGACCA 24708 Query 94679 CTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCT-TG--AACCTGA 94735 |||| | | | || | ||| || || | || | | ||| || ||||||| Sbjct 24709 AGTCGTACAACTTTAAGAAACTT---CACGCCGTCGCAAAGGTCATCTGTGGCAACCTGA 24765 Query 94736 ACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTGAAGC 94795 || | | |||||| |||| ||| |||||| ||||||| || ||| | | Sbjct 24766 ACCGCATCATCGACGTCAACTACTATCCCGTCGAGGAGGCGCGTCGTTCCAACTTCCGTC 24825 Query 94796 ATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCGTCTGC 94855 | || |||||||||||||| || || ||| | || || || | |||| | | || Sbjct 24826 ACCGTCCCATCGGCATCGGAGTGCAAGGTCTGGCCGATGCTTTCATGATCCTCGGCATGG 24885 Query 94856 CCTACGACTCTGTCGACGCG-GCGGGTTTGAATTTGAACATATTCGAAAGCATTTATTAC 94914 ||| ||||| ||| ||| || | | || | | || ||||| | ||| || || Sbjct 24886 CCTTTGACTCGCCCGAAGCGCGCAAG-CTCAACAAGCAAATTTTCGAGACCATCTACCAC 24944 Query 94915 GGGGCCATGAAACAATCCGTCCA-CTTGGCCAGATCGGACGGCGGGCCACACGAATCGTT 94973 | || || | | || | | |||| || | || || ||| || || | | | Sbjct 24945 GCCGCACTGGAGCGCTCTTGCGAGCTTGCCC--AACG--CGACGGTCCCTACCAGACCTA 25000 Query 94974 CCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTC 95033 || || |||||| |||| | |||| |||| | ||||| || | || || Sbjct 25001 CCAAGGCTCGCCCGCCTCCAAGGGAGAGCTGCAGTACGACATGTGGGGCGTCACACCTTC 25060 Query 95034 GGGTCTGTACGACTGGGAAGCTCT-ACGCGCTGATGTTATCAAACACGGTGTGAAAAACG 95092 | ||| || ||| | || | | || | || | | |||||| | ||| Sbjct 25061 TGACTTGTGGGATTGGACCACGCTGAAGAGC-AAGATTTCCGAGCACGGTCTTCGCAACT 25119 Query 95093 CGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGT 95152 ||||||| | || |||||||| || |||||||| | ||||| || ||| |||||| | Sbjct 25120 CGCTGCTGCTCGCACCCATGCCTACCGCCTCCACCTCTCAGATTCTCGGCTTCAACGAAT 25179 Query 95153 CGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCG 95212 || || |||| ||| |||||| | |||| | || ||||| ||||| || |||| | Sbjct 25180 GCTTTGAGCCCTACACATCCAACATCTACACGCGTCGTGTGCTGGCCGGAGAGTTCCAAG 25239 Query 95213 TCATCAACAAGCACCTCCTACGGGACCTGACGTC--TCTGGGTGTGTGGGGTGACAAGGT 95270 | ||||| | | || || || ||| ||| | |||| ||||| || ||| Sbjct 25240 TTGTCAACCCGTGGTTGCTGCGCGAGCTG--GTCGAGCAGGGTCTGTGGAATG---AGGG 25294 Query 95271 CAAGAACCAACTGC-TACGCGCCAA---CGGCTCCGTCCAGAACATCCCGCAAATACCGG 95326 || ||| ||| || | ||| | ||||||| |||| ||| | || ||||| | Sbjct 25295 CATGAA-AAACCGCATCATTGCCCATGGCGGCTCCATCCAAAACGTTCCCGGCATACCCG 25353 Query 95327 AGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGATACTCGACC 95386 | |||||||||||||||||||| ||||||||||| |||| ||| |||| Sbjct 25354 ACAGGATCAAGGCGCTCTACAAGACGGTGTGGGAGATTTCGCAAAAGTCGATCATCGAGA 25413 Query 95387 ACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAG 95420 || |||| || || | ||||||||||| || Sbjct 25414 TGGCTGCCGATCGTGGAGCATTCATCTGCCAAAG 25447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494720200740600