Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq318 269 3e-67 seq275 98.7 1e-15 seq233 95.1 1e-14 seq221 82.4 8e-11 >seq318 Length=903324 Score = 269 bits (298), Expect = 3e-67 Identities = 962/1459 (66%), Gaps = 51/1459 (3%) Strand=Plus/Minus Query 153025 ACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGA 153084 || ||||||| ||||| ||||| || |||| ||| || | | || | ||| ||| Sbjct 25251 ACGGGTTGACAACTTGGAACTCTCCGGCCAGCACACGACGCGTGTAGATGTTGGATGTGT 25192 Query 153085 AAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACG 153144 | || |||||| ||||||| ||| || || |||| |||| ||||| |||||| | Sbjct 25191 AGGGCTCAAAGCATTCGTTGAAGCCGAGAATCTGAGAGGTGGAGGCGGTAGGCATGGGTG 25132 Query 153145 CCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAAT 153204 | | || || || || || | |||||| | ||| | | ||||| || ||||| Sbjct 25131 CGAGCAGCAGCGAGTTGCGAAGACCGTGCTCGGAAATCTTGCTCTTCAGCGTGGTCCAAT 25072 Query 153205 CCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCC--TCGACTGGC 153262 |||||| | || ||||| || ||||||||||||||| | | |||| | || ||| Sbjct 25071 CCCACAAGTCAGAAGGTGTGACGCCCCACATGTCGTACTGCAGCTCTCCCTTGGA--GGC 25014 Query 153263 GGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGC-CT 153321 ||| ||| | || |||| |||||||||||||| || ||||| ||| || Sbjct 25013 GGGCGAGCCTTGGTAGGTCTGGTAGGGACCGTCGCGTTGGGCAAGCTCGCA-AGAGCGCT 24955 Query 153322 CGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGC 153381 | || ||| | | ||| ||||| ||| ||||| || ||||| | |||||| Sbjct 24954 CCAGTGCGGCGTGGTAGATGGTCTCGAAAATTTGCTTGTTGAGCTTGCGCGCTTCGGGCG 24895 Query 153382 TCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGA 153441 || | | ||||| || | || || || ||||||||||| || | |||| ||||| Sbjct 24894 AGTCAAAGGCCATGCCGAGGATCATGAAAGCATCGGCCAGACCTTGCACTCCGATGCCGA 24835 Query 153442 TGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCTATGGGATAGTGATTGCGATCGA 153501 |||| || || |||| || | ||| | | | |||||||| ||| |||| Sbjct 24834 TGGGACGGTGACGGAAGTTGGAACGACGCGCCTCCTCGACGGGATAGTAGTTGACGTCGA 24775 Query 153502 TAATTTTGTTGAGGTTGCGCAC-CACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCA 153560 | || ||| ||||||| ||| | || || | | || | |||||||| || | Sbjct 24774 TGATGCGGTTCAGGTTGC-CACAGATGACCTTTGCGACGGCGTGAAGTTTCTTAAAGTTG 24716 Query 153561 TAGGTCATTTCGTCGACGCGTACG--CATCGAT-TCACGGCAATAGACGCCAGATTACAG 153617 || | | || ||||| | || || | |||| || ||| || || |||| || ||| Sbjct 24715 TACG--ACTTGGTCGAAGTGT-CGATGAACGATGGCAGGGCGATGGATGCCAAGTTGCAG 24659 Query 153618 ACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTT 153676 ||||| ||| || |||| | ||||| | |||||||| ||| ||||| |||| || Sbjct 24658 ACGGCAACCTCGTCTGGCG-CAGAGTACTCGATGATCTCGGTGCACAGGTTACTGCTCTT 24600 Query 153677 TATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTA 153736 ||| ||||| || | ||| ||||| ||||| || ||| || ||| | ||||| | Sbjct 24599 GATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTCGCCGCATCCTTGTACAGCATAAA 24540 Query 153737 CGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTA-TGCAGGTCCTGCG-CTCGC 153794 || ||| ||||||| ||||| ||| | ||| | || ||| | |||| || | Sbjct 24539 GGGGTTGCCAGTCTCGATTTGCGCTTCCAAGAT-GGCGTACCACAGCTTTTGCGCCTTGA 24481 Query 153795 ACCCGCTGCCGATAGCGGCCCT-CGCTCTCGTATCGCTCGTACAGTCGC-TCAAACTCGT 153852 || || ||| |||| |||| ||||| |||||||| ||| |||||||| | Sbjct 24480 TGGTGC-GCTTGGCGCGACCCTCCGCT-TCGTACTTTTCGTACAG-CGCTTCAAACTCCT 24424 Query 153853 CGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGT 153912 |||| ||| ||||| | ||| || |||| | || ||||||| |||| ||| Sbjct 24423 CGCCATAGACTTCGGCCATGCCAGGGCACTCGTTGGGGCACATCAAGCTCCAC---TCGC 24367 Query 153913 CG--GCGTT-GACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGC 153969 || ||| ||| || |||||| || || || | ||| |||||||| | || |||| Sbjct 24366 CGTTCTGTTCGACACGCTTCATGAAGAGGTCTGGGATCCACAGCGCGTAGAACAGCTCGC 24307 Query 153970 GCGCCTTGCA-ATCCTCC---GCGCCCATGTTGCGTTTCAGATTGA-GCACGCTATAGAT 154024 | | || ||| |||||| || | ||||| ||| | | | || | | | || Sbjct 24306 GTG-CTCGCACTTCCTCCTTTCCGTGATTCTTGCG---CAGGTCCAGGAACTCGA-AAAT 24252 Query 154025 GTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTG 154081 ||| | ||||||||| || ||||| ||| | ||| || | | || || || || Sbjct 24251 GTCAGAGTGCCAGGGCTCGGCGTAGATGGCAAAGGCGCCAGGCCTCTTGTTGCCACCTTG 24192 Query 154082 ATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGC-GG 154140 || |||| ||| | | ||||||||||| |||| |||||| | | |||| |||| Sbjct 24191 GTCAACGTAGCGTGCAGTGTTGTTGAAGACTCGCAGCATGGGGACGATGCCG-TTGCTAA 24133 Query 154141 TGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAA 154200 ||| ||||| || | ||| ||| | |||| | | || | | | | ||| | Sbjct 24132 AGCCATTGGTGCCTGCAATGTAGCTTCCGGTGCCGCGAATGTTGTGGATGCTCAGGCCTA 24073 Query 154201 TGCCGCCGCCGTACTT--TGAT-ATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCGT 154257 | || ||| | ||| | || ||||| || | ||| || || ||||||||||| Sbjct 24072 TACCACCGGCAGTCTTGCTAATCATGGC-GCAC-GTC-TTGAGAGTGTCGTAGATGCCGT 24016 Query 154258 CGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTC 154317 ||||||| || || | || || | ||| ||||| | | ||| || |||| | Sbjct 24015 CGATGCTGTCATCCTTCATGCAGACGAGGAAGCACGACGAGAGTTGAGGGTGAGGCGTGC 23956 Query 154318 CCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACG 154377 | || |||||||| || ||||| ||||| |||| | ||| | | ||||| Sbjct 23955 CGGCGTTGAAGAGGGTCGGGGAGGCGTGGGTAAAGTACTTTTCGGACATGAGGTTGTACG 23896 Query 154378 TTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGT 154437 | || || || |||| ||||||||||| ||||| | ||||||||||| | ||||| Sbjct 23895 TCTCAATCACGGAATCGACGTCATCGCCGTGGATGCCAACGGCGACGCGCATAATCATGT 23836 Query 154438 GCTGCGGACGTTCGGCGAC 154456 |||| |||||||||||||| Sbjct 23835 GCTGAGGACGTTCGGCGAC 23817 >seq275 Length=588737 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/195 (73%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAAT 138481 |||||| || |||||||||||| || ||| | || | |||||||| || || || | Sbjct 39388 CTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGCCA-TCCTCGAGCTGCTTGCCAGCGA 39330 Query 138482 AGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-AT 138540 |||| ||||| |||||||| ||||| || || || ||||| ||| || || | || Sbjct 39329 AGATGAGACGTTGTTGGTCAGGAGGAATTCCCTCCTTGTCTTGGATCTTGGCCTTCACAT 39270 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | ||||| | ||||| ||||| | || | || ||||| ||||| || || Sbjct 39269 TG-TCGATCGTGTCCGAAGACTCGACCTCCAAGGTGATGGTCTTACCCGTCAGGGTCTTG 39211 Query 138601 ACAAAAATCTGCATG 138615 || |||||||||||| Sbjct 39210 ACGAAAATCTGCATG 39196 >seq233 Length=223772 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| ||||||||||||||| | || || ||| ||||||||||| || | | | Sbjct 211282 CTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGACCGTCTTCGAGTTGTTTGCCAGCAAA 211341 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 || || || || || || ||||| || ||||||||||| ||| ||| || | | Sbjct 211342 AATGAGGCGTTGCTGATCAGGAGGAATGCCTTCTTTGTCTTGGATCTTTGCCTTGACGTT 211401 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | ||| ||| | ||| ||||| | || | ||| || || || || ||||| || Sbjct 211402 GTCAATGGTATCGCTACTCTCTACCTCCAAAGTGATCGTCTTTCCGGTGAGGGTTTTGAC 211461 Query 138603 AAAAATCTGCAT 138614 ||| |||||||| Sbjct 211462 AAAGATCTGCAT 211473 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 138424 TCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAG 138483 ||||| || ||||||||||| | || || ||| |||||||| || |||| | || Sbjct 211055 TCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGACCGTCTTCGAGTTGCTTGCCGGCAAAG 211114 Query 138484 ATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATT 138541 || || | || ||||| || || || || |||||||| ||| | |||| || ||| Sbjct 211115 ATGAGCCTTTGCTGGTCGGGTGGGATGCCCTCTTTGTC-TTGAATCTTTGCCTTGACATT 211173 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 | || | ||| ||| | ||||||||| | || | ||| || ||||| ||||| || | Sbjct 211174 G-TCAATGGTATCGCTGCTCTCCACCTCCAAAGTAATCGTCTTTCCAGTGAGAGTCTTCA 211232 Query 138602 CAAAAATCTGCAT 138614 | ||||| ||||| Sbjct 211233 CGAAAATTTGCAT 211245 >seq221 Length=819827 Score = 82.4 bits (90), Expect = 8e-11 Identities = 79/99 (80%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 138424 TCCTTTTGAATGTTGTAGTCGCTCATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATA 138482 || || || |||||||||||| || ||| | || | |||||||| || || |||| | | Sbjct 381932 TCTTTCTGGATGTTGTAGTCGGACAAAGTTCTGCCA-TCCTCGAGCTGCTTTCCGGCAAA 381874 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 ||| |||||||||||||| ||||| || || |||||||| Sbjct 381873 GATCAGACGCTGTTGGTCGGGAGGAATGCCCTCTTTGTC 381835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496259391409200