Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq221 107 2e-18 seq318 104 2e-17 seq275 87.8 2e-12 >seq221 Length=819827 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || || || |||||||| | || | || || || || ||||| ||||| || | Sbjct 382196 CCGCCACGCAAACGCAACACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCCGAC 382137 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | ||| || ||||| || || || ||||||||| || ||||||||||| Sbjct 382136 AGGGTCCTTCCATCCTCCAGCTGCTTGCCCGCAAAGATCAATCTTTGTTGATCGGGAGGA 382077 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| || ||||| | |||| ||||||| |||||||| Sbjct 382076 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATAGTGTCCGAGCTCTCGACC 382017 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||| |||| || || ||||| || ||||| Sbjct 382016 TCCAGCGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 381970 >seq318 Length=903324 Score = 104 bits (114), Expect = 2e-17 Identities = 193/275 (70%), Gaps = 10/275 (4%) Strand=Plus/Minus Query 147273 GTAGATGCCGTCGATGCTGTCTTCCTTGATGCATTGCAGGAAACACGAACACATTTGGGG 147332 ||||||||||||||||||||| ||||| ||||| ||||| ||||| | | ||| || Sbjct 24026 GTAGATGCCGTCGATGCTGTCATCCTTCATGCAGACGAGGAAGCACGACGAGAGTTGAGG 23967 Query 147333 ACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAACGTGCC---CAGACT 147389 || |||||| || || || || ||| |||||| || || || | | ||| Sbjct 23966 GTGAGGCGTGCCGGCGTTGAAGAGGGTCGGGGAGGCGTGGGTAAA-GTACTTTTCGGAC- 23909 Query 147390 CATCAATTGATACGTTTCAATGGCGCTCATAACGTCATCGCCGTGAATGGCCAGGGCGAC 147449 || | | ||||| ||||| || |||||||||||||| ||| | | |||||| Sbjct 23908 -ATGAGGTTGTACGTCTCAATCACGGAATCGACGTCATCGCCGTGGATGCCAACGGCGAC 23850 Query 147450 GCGCATGAGCATGTGCTGGGGTCGTTCCGCAATCACGT-CATTGACTTTTAATAGATATC 147508 |||||| | ||||||||| || ||||| || | | ||| |||||| | || ||| Sbjct 23849 GCGCATAATCATGTGCTGAGGACGTTCGGCGA-CGCGTCCATTGATGCGAAGCAGGTAT- 23792 Query 147509 CATTGGT-CAGAGTTTTGAAACCAAAGTACTTGTA 147542 || | | ||| || ||||| |||||||| || || Sbjct 23791 GATCGCTCCAGCGTCTTGAAGCCAAAGTAGTTCTA 23757 >seq275 Length=588737 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || || || ||||| ||| || || | ||| || ||||| || |||||| | Sbjct 39388 CTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGCCATCCTCGAGCTGCTTGCCAGCGAA 39329 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTG 127041 ||| | || || || || ||||| || ||||||||||| ||| || ||| | | Sbjct 39328 GATGAGACGTTGTTGGTCAGGAGGAATTCCCTCCTTGTCTTGGATCTTGGCCTTCACATT 39269 Query 127042 TTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 |||| ||||||| | |||||| || | ||| | || || || ||||| || || || Sbjct 39268 GTCGATCGTGTCCGAAGACTCGACCTCCAAGGTGATGGTCTTACCCGTCAGGGTCTTGAC 39209 Query 127102 AAAAATCTGCATG 127114 |||||||||||| Sbjct 39208 GAAAATCTGCATG 39196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475497917276400