Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq318 104 2e-17 >seq318 Length=903324 Score = 104 bits (114), Expect = 2e-17 Identities = 902/1441 (63%), Gaps = 43/1441 (3%) Strand=Plus/Plus Query 122901 GTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGCGAC 122960 |||||||||||| ||| || ||| | ||||||||||| | ||| | ||||| ||| Sbjct 23817 GTCGCCGAACGTCCTCAGCACATGATTATGCGCGTCGCCGTTGGCATCCACGGCGATGAC 23876 Query 122961 ATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGAGT 123020 |||| || || || || ||| | | ||||| |||| | || || ||||| Sbjct 23877 GTCGATTCCGTGATTGAGACGTACAACCTCATGTCCGAAAAGTACTTTACCCACGCCTCC 23936 Query 123021 CCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACC 123080 || || | ||| |||||||||| ||||| | || ||||| || | || | Sbjct 23937 CCGACCCTCTTCAACGCCGGCACGCCTCACCCTCAACTCTCGTCGTGCTTCCTCGTCTGC 23996 Query 123081 TTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGA-TTGCGCGTTGATTTC 123139 || || ||||||||| ||| ||||| || ||| | | || ||||| ||||| Sbjct 23997 ATGAAGGATGACAGCATCGACGGCATCTACGACACTCT-CAAGACGTGCGCCATGATTAG 24055 Query 123140 CAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCGCAT 123199 ||| || ||| || |||||| ||| | | ||| || | | ||| ||||||| ||| Sbjct 24056 CAAGACTGCCGGTGGTATAGGCCTGAGCATCCACAACATTCGCGGCACCGGAAGCTACAT 24115 Query 123200 CAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAACGC 123259 | ||||| | || | | ||| ||| ||||||||||||| | ||| ||| | Sbjct 24116 TGCAGGCACCAATGGCTTTAGCAACGGCATCGTCCCCATGCTGCGAGTCTTCAACAACAC 24175 Query 123260 CGTGCGGCACGTCGACCAGGGCGGCAA----ACGCAAAGGCGCGATGGCGATCTATCTAG 123315 | || |||| ||||| || ||||| | || ||||| | || ||||| | Sbjct 24176 TGCACGCTACGTTGACCAAGGTGGCAACAAGAGGC-CTGGCGCCTTTGCCATCTACGCCG 24234 Query 123316 AACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACA---TGGGGGCGG 123372 | || |||||| ||| | | ||| || | | | ||||| | || || Sbjct 24235 AGCCCTGGCACTCTGACATTTTCGAGTTCCTGGACCT---GCGCAAGAATCACGGAAAGG 24291 Query 123373 AAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGAC 123432 | ||| | ||| ||||| |||| ||||| | ||| | || || | || ||| | Sbjct 24292 AGGAAGTGCGAGCACGCGAGCTGTTCTACGCGCTGTGGATCCCAGACCTCTTCATGAAGC 24351 Query 123433 GCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAGCG 123492 | || || | |||||| |||| | ||||| ||| | ||| || ||| || || Sbjct 24352 GTGTCGAACAGAACGGCGAGTGGAGCTTGATGTGCCCCAACGAGTGCCCTGGCATGGCCG 24411 Query 123493 ACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAACAGG 123552 | || || ||| | ||||||| | | |||||| | ||||| ||| ||| | | Sbjct 24412 AAGTCTATGGCGAGGAGTTTGAAGCGCTGTACGAAAAGTACGA-AGCGGAGGGTCGC-GC 24469 Query 123553 TTAG-TCAGGTTC-CGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGAAAC 123610 || || || ||| | | ||| | || | ||| | ||| |||| || Sbjct 24470 CAAGCGCACCATCAAGGCGCAAAAGCTGTGGTACGCCATCTTGGAAGCGCAAATCGAGAC 24529 Query 123611 CGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAACTT 123670 || | || | ||||| ||||| || || ||| | || | ||| |||| ||| | Sbjct 24530 TGGCAACCCCTTTATGCTGTACAAGGATGCGGCGAACCGCAAGAGCAACCAGAAGAACCT 24589 Query 123671 GGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCCGATCA 123730 ||| || || || | ||||| || ||| |||| || ||||| ||| | | || | Sbjct 24590 GGGCACCATCAAGAGCAGTAACCTGTGCACCGAGATCATCGAGTACTCTGCGCCAGACGA 24649 Query 123731 AGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTG-AATCGTTGCGTCGAAA--ACGGC-- 123785 || ||||| || || ||||| || || | || |||||| | |||| | || | Sbjct 24650 GGTTGCCGTCTGCAACTTGGCATCCATCGCCCTGCCATCGTT-CATCGACACTTCGACCA 24708 Query 123786 --GCTTTTAATTTCCAAACGCTCAAACGCATAACAAA----AACTGTAGTAAAGAATTTG 123839 | | || || | | || | | | |||| | |||| | || || Sbjct 24709 AGTCGTACAACTTTAAGAAACTTCACGCCGTCGCAAAGGTCATCTGTGG----CAACCTG 24764 Query 123840 AACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAA 123899 ||| || ||||| || || | ||||| | ||||| |||||| || || || Sbjct 24765 AACCGCATCATCGACGTCAACTACTATCCCGTCGAGGAGGCGCGTCGTTCCAACTTCCGT 24824 Query 123900 CACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATG 123959 ||| | || |||| | || | ||||| ||||||| || || | || || ||||| Sbjct 24825 CACCGTCCCATCGGCATCGGAGTGCAAGGTCTGGCCGATGCTTTCATGATCCTCGGCATG 24884 Query 123960 CCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTAC 124019 | | || |||||| ||| || | |||||| ||| || || || || Sbjct 24885 GCCTTTGACTCGCCCGAAGCGCGCAAGCTCAACAAGCAAATTTTCGAGACCATCTACCAC 24944 Query 124020 GGCGCTTTGGAGGCGAGC-TGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGC 124078 | ||| |||| ||| | ||||| ||||| || |||| | ||| | | ||| Sbjct 24945 GCCGCACTGGA-GCGCTCTTGCGAGCTTGCCCAACGCGACGGTCCCTACCAGACCTACCA 25003 Query 124079 GGGC-AGCCCGGCGAGCCGAGGTA-TTTTGCAGTACGACATGTGGAATGCTACACCGACA 124136 ||| ||||| | || ||| | ||||||||||||||||| | ||||| | Sbjct 25004 AGGCTCGCCCGCC--TCCAAGGGAGAGCTGCAGTACGACATGTGGGGCGTCACACCTTCT 25061 Query 124137 AATTTGTGGGACTGGA--GCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAACT 124194 | |||||||| |||| || | | | ||| || || ||||||| | || |||| Sbjct 25062 GACTTGTGGGATTGGACCACGCTGAAGAGCAA--GATTTCCGAGCACGGTCTTCGCAACT 25119 Query 124195 CGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAAT 124254 ||||| || | || |||||| || || |||| |||| ||| | || |||||||| Sbjct 25120 CGCTGCTGCTCGCACCCATGCCTACCGCCTCCACCTCTCAGATTCTCGGCTTCAACGAAT 25179 Query 124255 CCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAG 124314 ||| ||||| | ||| ||| | ||| ||| || ||| | ||||| || || |||| Sbjct 25180 GCTTTGAGCCCTACACATCCAACATCTACACGCGTCGTGTGCTGGCCGGAGAGTTCCAAG 25239 Query 124315 T 124315 | Sbjct 25240 T 25240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452000459730600