Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq318 123 3e-23 seq233 111 2e-19 >seq318 Length=903324 Score = 123 bits (136), Expect = 3e-23 Identities = 548/856 (64%), Gaps = 15/856 (2%) Strand=Plus/Minus Query 116425 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 116484 || |||||||| || |||| || || || | ||| || ||| |||||| || Sbjct 24685 GGCAGGGCGATGGATGCCAAGTTGCAGACGGCAACCTCGTCTGGCGCAGAGTACTCGATG 24626 Query 116485 ATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 116544 || || || |||| || ||||| |||||||||| |||||| || || ||| | Sbjct 24625 ATCTCGGTGCACAGGTTACTGCTCTTGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGG 24566 Query 116545 TTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 116604 || |||||||||||| |||||| | || | || ||||| |||| | | | || Sbjct 24565 TTCGCCGCATCCTTGTACAGCATAAAGGGGTTGCCAGTCTCGATTTGCGCTTCCAAGATG 24506 Query 116605 GCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTT 116663 || | ||| | | | ||| || | | ||| ||||| || |||||| | |||||||| Sbjct 24505 GCGTACCACAGCTTTTGCGCCTTG-ATGGTGCGCTTGGCGCGACCCTCCGCTTCGTACTT 24447 Query 116664 TGTGTAGAGGGCCTCAAACTCTTCACCCACAG-CCTCTGAGAGCCCTGGTGCCTTATCTG 116722 | ||| || || |||||||| || ||| || | || | | || || || | | Sbjct 24446 TTCGTACAGCGCTTCAAACTCCTC-GCCATAGACTTCGGCCATGCCAGGGCACTCGTTGG 24388 Query 116723 GACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCC 116782 | || | | ||| | || || || || ||||||||||||||||||||||||| Sbjct 24387 GGCACATCAAGCTCCACTCGCCGTTCTGTTCGACACGCTTCATGAAGAGGTCTGGGATCC 24328 Query 116783 AGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACT 116842 | ||||| |||| || || || || |||| || | || ||||| |||| | Sbjct 24327 ACAGCGCGTAGAACAGCTCGCGTGCTCGCACTTCCTCCTTTCCGTGATTCTTGCGCAGGT 24268 Query 116843 CCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGC 116902 ||| || || | || || | |||||| || || ||| | || | | | || || Sbjct 24267 CCAGGAACTCGAAAATGTCAGAGTGCCAGGGCTCGGCGTAGATGGC-AAAGGCGCCAGGC 24209 Query 116903 GAC----GACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGA 116958 | ||| | |||| || || | || || ||| || || || ||||| || Sbjct 24208 CTCTTGTTGCCACCTTGGTCAACGTAGCGTGCAGTGTTGTTGAAGACTCGCAGCATGGGG 24149 Query 116959 ATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTT--GTTGGCTCTGACAT 117016 | ||| || | |||||| || || ||| | ||| | || | | | | Sbjct 24148 ACGATGCCGTTGCTAAAGCCATTGGTGCCTGCAAT--GTAGCTTCCGGTGCCGCGAATGT 24091 Query 117017 CGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGAC 117076 ||||||| || || ||||| || || ||| || |||||| | ||||| Sbjct 24090 TGTGGATGCTCAGGCCTATACCACCGGCAGTCTTGCTAATCATGGCGCACGTCTTGAGAG 24031 Query 117077 TGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTT 117136 || ||||||| || ||||| |||| |||| | || ||||||||| ||| | || Sbjct 24030 TGTCGTAGATGCCGTCGATGCTGTCATCCTTCATGCAGACGAGGAAGCACGACGAGAGTT 23971 Query 117137 GTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATAC-CTTGG 117195 | || || || || |||||||||||||| || | |||||| | || ||| || | Sbjct 23970 GAGGGTGAGGCGTGCCGGCGTTGAAGAGGGTCGGGGAGGCGTGGGT-AAAGTACTTTTCG 23912 Query 117196 GACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAG 117255 ||||| | ||| ||||| | || || | ||| || ||||| || || | | | Sbjct 23911 GACATGAGGTTGTACGTCTCAATCACGGAATCGACGTCATCGCCGTGGATGCCAACGGCG 23852 Query 117256 ACCCGCATAAACATGT 117271 || ||||||| ||||| Sbjct 23851 ACGCGCATAATCATGT 23836 >seq233 Length=223772 Score = 111 bits (122), Expect = 2e-19 Identities = 121/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| ||||| ||||| ||||||||||| ||||| ||||||| ||| || Sbjct 43226 GCAAAGTCGGTGTGAAGACCTTCGTCTCGGGAGATGAGCTCATTGGAGAAGCTCAGTCCC 43285 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| ||||||| |||||| | ||| || || | | ||| || || ||||||||||| Sbjct 43286 GGCATCAGACCCCTCTTCTTGAGCCAAAAGATGGAAGCAAAAGATCCGGAGAAGAAGATG 43345 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGA 127680 ||||| || || || || | || | ||||| ||||| Sbjct 43346 CCCTCGACGGCGGCAAAGGCGATCAGTCTCTCGGAGAAGGA 43386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613503480612600