Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq318 210 3e-49 seq233 136 6e-27 >seq318 Length=903324 Score = 210 bits (232), Expect = 3e-49 Identities = 390/564 (69%), Gaps = 14/564 (2%) Strand=Plus/Minus Query 203846 ACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTCTTT 203905 || ||||||||||||||||| ||||||||||| | | |||||||||| |||| ||||| Sbjct 25588 ACGGTGAACTGAATGGCGTTGGCGGCAGGCCTGGTGCGCAGATAGTACGTGCCCGTCTTG 25529 Query 203906 AGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAG-TTTGCTCACGTTGGGGTCGGC 203964 || ||||||| ||| ||||| | |||||| || | || | | | |||| || | | Sbjct 25528 AGTCCCTTCTTCCAGCCGTAAAAGTGCATCGAGGTGAGCTGTCCAAACGTCGGCGATTG- 25470 Query 203965 CATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATT 204024 || |||||||||| || |||||| |||||| | | ||||| || ||||| | Sbjct 25469 CAGATGAATGTTCAAGCTTTGACTTTGGCAGATGAATGCTCCACGATCGGCAGCCATCTC 25410 Query 204025 GATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCTGGT-GTGTTGA 204082 ||| || | ||| |||||||||||||||||||||||| | | || || || | ||| | Sbjct 25409 GATGATCGACTTTTGCGAAATCTCCCACACCGTCTTGTAGAGCGCCT-TGATCCTGTCGG 25351 Query 204083 GGCACATCTTCC---CACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGT 204138 | | | || |||| | ||| |||||| | ||| || | | | || | Sbjct 25350 G-----TATGCCGGGAACGTTTTGGATGGAGCCGCCATGGGCAATGATGCGGTTTTTCAT 25296 Query 204139 CTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTG 204198 |||| ||||| ||| | || |||||| |||| || ||||||| | || Sbjct 25295 GCCCTCATTCCACAGACCCTGCTCGACCAGCTCGCGCAGCAACCACGGGTTGACAACTTG 25236 Query 204199 AAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTC 204258 || ||||||| |||||| | || ||| | | |||| ||| | || || || || Sbjct 25235 GAACTCTCCGGCCAGCACACGACGCGTGTAGATGTTGGATGTGTAGGGCTCAAAGCATTC 25176 Query 204259 GTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTT 204318 |||| ||||| |||||||| |||| ||| || |||||||| || || ||||| ||||| Sbjct 25175 GTTGAAGCCGAGAATCTGAGAGGTGGAGGCGGTAGGCATGGGTGCGAGCAGCAGCGAGTT 25116 Query 204319 GCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACTGGG 204378 ||| | ||||| | | | ||| |||||| | |||||| || || || || Sbjct 25115 GCGAAGACCGTGCTCGGAAATCTTGCTCTTCAGCGTGGTCCAATCCCACAAGTCAGAAGG 25056 Query 204379 TTTCACGCCCCACATGTCGAACTG 204402 | | ||||||||||||||| |||| Sbjct 25055 TGTGACGCCCCACATGTCGTACTG 25032 Score = 105 bits (116), Expect = 1e-17 Identities = 519/815 (64%), Gaps = 22/815 (3%) Strand=Plus/Minus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 ||| | |||||||||||||| ||||| || ||| | |||| | || |||||| Sbjct 24632 CTCGATGATCTCGGTGCACAGGTTACTGCTCTTGATGGTGCCCAGGTTCTTCTGGTTGCT 24573 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCG 205002 ||||||||| | |||||||||| ||| || || | || |||| || || | | Sbjct 24572 CTTGCGGTTCGCCGCATCCTTGTACAGCATAAAGGGGTTGCCAGTCTCGATTTGCGCTTC 24513 Query 205003 CAGAATGTGGGTCCACAATTCGCGAGCCTCCACTTGCTTCACGTACATC--CCTTGAGAC 205060 || ||| | ||||| | | |||| | || | | | | | || | | Sbjct 24512 CAAGATGGCGTACCACAGCTTTTGCGCCTTGA--TGGTGCGCTTGGCGCGACCCTCCGCT 24455 Query 205061 TCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACAT 205120 ||||| ||| ||||||||| |||| || || || || || || || || || Sbjct 24454 TCGTACTTTTCGTACAGCGCTTCAAACTCCTCGCCATAGACTTCGGCCATGCCAGGGCAC 24395 Query 205121 TTTTTGGGACACATCAGAGACCACAT-CTGATCGTCTTTCACCCTCTCCATAAACAGGTC 205179 | ||||| ||||||| |||| | | || | || || | || ||| || ||||| Sbjct 24394 TCGTTGGGGCACATCAAGCTCCACTCGCCGTTC-TGTTCGACACGCTTCATGAAGAGGTC 24336 Query 205180 GCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTT 205239 ||||||||| |||| ||||| || || || | | | | || | ||| | ||||| Sbjct 24335 TGGGATCCACAGCGCGTAGAACAGCTCGCGTGCTCGCACTTCCTCCTTTCCGTGATTCTT 24276 Query 205240 TTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGC 205299 || |||||| | | |||||| | |||||| ||||| | | ||| | || Sbjct 24275 GCGCAGGTCCAGGAACTCGAAAATGTCAGAGTGCCAGGGCTCGGCGTAGATGGCAAAGGC 24216 Query 205300 GCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAG 205359 ||| ||||||||||| ||||| ||||| || ||| | | |||||| |||||||| Sbjct 24215 GCCAGGCCTCTTGTTGCCACCTTGGTCAACGTAGCGTGCAGTGTTGTTGAAGACTCGCAG 24156 Query 205360 CATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAG---C 205416 ||| || || | |||||| || || |||| ||| ||| | | | | Sbjct 24155 CATGGGGACGATGCCGTTGCTAAAGCCATTGGTGCCTGCAATG---TAGCTTCCGGTGCC 24099 Query 205417 CCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCAC-T 205475 | | |||| |||| | ||| || || || | | |||| ||| ||||||| | Sbjct 24098 GCGAATGTTGTGGATGCTCAGGCCTATACCACCGGCAGTCTTGCTAATCATGGCGCACGT 24039 Query 205476 CTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCACG 205535 |||| |||||| ||||||||| ||||| || ||| || || || |||||| Sbjct 24038 CTTG-AGAGTGTCGTAGATGCCGTCGATGCTGTCATCCTTCATGCAGACGAGGAAGCACG 23980 Query 205536 AAGCCAGCTTGGCAAAGTTG----GTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTG 205591 | | || ||| | | || ||||| |||| |||||| || ||| ||||||| | Sbjct 23979 ACGAGAG-TTG---AGGGTGAGGCGTGCCGGCGTTGAAGAGGGTCGGGGAGGCGTGGGTA 23924 Query 205592 AAGCGCTTCTCGCTCAAACACCTGTAGGTCTCCAGCACGCTCTCCAGATCGAAGCCGTGA 205651 ||| ||| ||| || |||| ||||| | |||| || | || |||||| Sbjct 23923 AAGTACTTTTCGGACATGAGGTTGTACGTCTCAATCACGGAATCGACGTCATCGCCGTGG 23864 Query 205652 ATACCTATGGCGATCCTCATGAAGAGGTGTTGAGG 205686 || || | ||||| | ||| | | ||| ||||| Sbjct 23863 ATGCCAACGGCGACGCGCATAATCATGTGCTGAGG 23829 >seq233 Length=223772 Score = 136 bits (150), Expect = 6e-27 Identities = 428/647 (66%), Gaps = 31/647 (5%) Strand=Plus/Plus Query 159812 ACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGC 159871 ||||| || || || | ||| ||| |||| ||||||||||| |||||||| | || || Sbjct 43115 ACGGGCAGTGCGTCGGTCAGGAACGCCTTTTCAATCTCGACAGCTTCGGTGATGATGCGC 43174 Query 159872 GAGACACGTTCGTACCCCGGCTTGCC---CAAAATGTGGTCCTTAAACAGGAGGCACGCA 159928 ||| ||| || | || | | | | || ||| ||| || ||||| ||| Sbjct 43175 TTGAC-CGT--GT---CTGGATGGGCACGCTTCTTGAGGTGGGAAAAGAGCAGGCAGGCA 43228 Query 159929 AAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGC 159988 |||||| ||| || || ||||| || ||||||| ||| ||||| | | | || |||||| Sbjct 43229 AAGTCGGTGTGAAGACCTTCGTCTCGGGAGATGAGCTCATTGGAGAAGCTCAGTCCCGGC 43288 Query 159989 ATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCC 160048 || | || | | ||||||||||| |||| ||||||| ||| || ||||| ||| Sbjct 43289 ATCAGACCCCTCTTCTTGAGCCAAAAGATGGAAGCAAAAGATCCGGAGAAGAAGATGCCC 43348 Query 160049 TCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGG--CGTTGGTGTCATGGGTCC 160106 || ||||| ||||| || | || ||||| || || | ||| |||| | ||| Sbjct 43349 TCGACGGCGGCAAAGGCGATCAGTCTCTCGGAGAAGGAAGATCGT--CTGTCGGAGATCC 43406 Query 160107 ACCTTTTGGCCCATTCAGCCTTCTTTGC--GATGCACGGCATGCG-CTCGACGGCGTTAA 160163 |||| ||||| ||||||| ||||| || ||||| | || ||||||||| | || Sbjct 43407 ACCTGAGTGCCCAGTCAGCCT--TTTGCTTGA-CCACGGGAATCGTCTCGACGGCATCAA 43463 Query 160164 ACA--ATCTGTC-CTGCTC--CTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTA 160218 ||| | || || |||||| ||| | ||| ||| | || ||| ||||| Sbjct 43464 ACAAGAACTCTCTCTGCTCTGGTTCGC-----GGATATAAGTGTCGATGAGCAGAGAGTA 43518 Query 160219 CATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAG 160278 | || | ||| | || || || || || || ||| || || | |||| | | Sbjct 43519 AGTCTCCGAGTGAATGTTCTCCATCATGATTTGGAAACCGTAAAAGCATCTGGCCT-CTG 43577 Query 160279 ATAC-TGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGG 160337 | | |||||||| || | ||| | | ||| || |||| || | ||||| | | Sbjct 43578 CTGCTTGCACCTCTTGCGAGAATCGCTCCACCAAGTTCTCATTCACGATGCCGTCCGAAG 43637 Query 160338 CCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTT 160397 | |||||||| || | ||||||||||| || || ||||| | | |||||| | || | Sbjct 43638 CTGCAAAGAAGGCGAGCACGTGAGAGACAAAGTGCCTCTCATTGTCGTTGAGCTTGTTGT 43697 Query 160398 CCCAGTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAA 160444 |||| | || ||| | | | ||| | ||||| ||| ||||| Sbjct 43698 CCCAATCATGCAGGTCCTTGCTGAGATCGATTTCTTCTGCGGTCCAA 43744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795150379371600