Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq275 147 5e-30 seq221 114 3e-20 seq233 109 1e-18 >seq275 Length=588737 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||| ||||| |||||| |||| ||||||||| | || |||||| ||||| Sbjct 39408 AGCACAAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGCCATCC 39349 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || |||||||||||||| || ||||| ||| |||||| || || Sbjct 39348 TCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCAGGAGGAATTCCCTCCTTGTCT 39289 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| |||| ||||| | | || || ||||| ||||| ||| Sbjct 39288 TGGATCTTGGCCTTCACATTGTCGATCGTGTCCGAAGACTCGACCTCCAAGGTGATGGTC 39229 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| || || || || ||||| || Sbjct 39228 TTACCCGTCAGGGTCTTGACGAAAATCTG 39200 >seq221 Length=819827 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 || ||||||||||| || ||||| || | ||||||||| | || ||||||||||| ||| Sbjct 382178 ACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCCGACAGGGTCCTTCCATCCTCC 382119 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 |||||||| || || ||||| | | || || || ||| ||| || || ||||| Sbjct 382118 AGCTGCTTGCCCGCAAAGATCAATCTTTGTTGATCGGGAGGAATACCCTCCTTGTCCTGG 382059 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 ||||| ||| || |||| ||||| | | || || |||| |||||| ||||| Sbjct 382058 ATCTTGGCCTTGACATTGTCGATAGTGTCCGAGCTCTCGACCTCCAGCGTGATGGTCTTG 381999 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 || || | || |||||||| ||||| Sbjct 381998 CCAGTCAAGGTCTTCACAAAGATTTG 381973 Score = 95.1 bits (104), Expect = 3e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 199439 TCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 || || |||| ||||||||| | |||||| || ||||| || |||||||||||||| ||| Sbjct 381932 TCTTTCTGGATGTTGTAGTCGGACAAAGTTCTGCCATCCTCGAGCTGCTTTCCGGCAAAG 381873 Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 || |||||||| ||||| ||| ||| || ||| || || ||||| Sbjct 381872 ATCAGACGCTGTTGGTCGGGAGGAATGCCCTCTTTGTCTTGGATCTT 381826 >seq233 Length=223772 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 199439 TCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 ||||| |||| ||||||||||| | || | || ||||| || ||||| ||||| ||| Sbjct 211055 TCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGACCGTCTTCGAGTTGCTTGCCGGCAAAG 211114 Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGAT 199558 ||||| | |||||||| || || || ||| || ||||||||| ||| || Sbjct 211115 ATGAGCCTTTGCTGGTCGGGTGGGATGCCCTCTTTGTCTTGAATCTTTGCCTTGACATTG 211174 Query 199559 TCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACA 199618 || | ||| || | | || || ||||| || |||||||| || |||||||| ||||| Sbjct 211175 TCAATGGTATCGCTGCTCTCCACCTCCAAAGTAATCGTCTTTCCAGTGAGAGTCTTCACG 211234 Query 199619 AAAATTTG 199626 |||||||| Sbjct 211235 AAAATTTG 211242 Score = 102 bits (112), Expect = 2e-16 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 199438 CTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAA 199497 |||||| || | ||||||||| | | || | || ||||| || || || || || || Sbjct 211282 CTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGACCGTCTTCGAGTTGTTTGCCAGCAAA 211341 Query 199498 GATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGA 199557 ||||| || ||||| || ||| ||| |||||| || || |||||| ||| ||| Sbjct 211342 AATGAGGCGTTGCTGATCAGGAGGAATGCCTTCTTTGTCTTGGATCTTTGCCTTGACGTT 211401 Query 199558 TTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCAC 199617 || | ||| || | | ||||| ||||| ||||||||||| || ||||| ||||| || Sbjct 211402 GTCAATGGTATCGCTACTCTCTACCTCCAAAGTGATCGTCTTTCCGGTGAGGGTTTTGAC 211461 Query 199618 AAAAATTTG 199626 ||| || || Sbjct 211462 AAAGATCTG 211470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178914274107495