Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq275 109 6e-19 seq233 107 2e-18 seq221 107 2e-18 >seq275 Length=588737 Score = 109 bits (120), Expect = 6e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| || || | || |||||||| ||||| ||||||||||| ||||| | | || || Sbjct 39406 CACAAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGCCATCCTC 39347 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||||||| ||||| || | || || ||||| | || | | ||||||||| Sbjct 39346 GAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCAGGAGGAATTCCCTCCTTGTCTTG 39287 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||| | | | | |||||| || || || |||| |||||||| || Sbjct 39286 GATCTTGGCCTTCACATTGTCGATCGTGTCCGAAGACTCGACCTCCAAGGTGATGGTCTT 39227 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||||| || || || || || ||||| Sbjct 39226 ACCCGTCAGGGTCTTGACGAAAATCTGCAT 39197 >seq233 Length=223772 Score = 107 bits (118), Expect = 2e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||||| || || | | ||| | ||||| ||| | ||||| ||||| ||||| ||||| Sbjct 211012 TTATTGACCACCGCGCAGACGAAGCACCAAATGAAGAGTACTTTCCTTCTGGATGTTGTA 211071 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 ||| || || ||||| |||| ||||| ||||||||||| || || | | |||||||| Sbjct 211072 GTCAGAAAGCGTGCGACCGTCTTCGAGTTGCTTGCCGGCAAAGATGAGCCTTTGCTGGTC 211131 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA 46539 || || | || ||| ||||| ||||| ||||| | | | || ||||| Sbjct 211132 GGGTGGGATGCCCTCTTTGTCTTGAATCTTTGCCTTGACATTGTCAATGGTATCGCTGCT 211191 Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| |||| || || || || || || || || || || || |||||||| Sbjct 211192 CTCCACCTCCAAAGTAATCGTCTTTCCAGTGAGAGTCTTCACGAAAATTTGCAT 211245 Score = 105 bits (116), Expect = 8e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| || | || |||||||| || || ||||||||||| || ||||| | Sbjct 211258 ACGAAGCACCAAGTGAAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGACC 211317 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| ||||| || ||||| || || || | ||| ||||| || | || | || || || Sbjct 211318 GTCTTCGAGTTGTTTGCCAGCAAAAATGAGGCGTTGCTGATCAGGAGGAATGCCTTCTTT 211377 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 ||| |||||| ||||| ||| | | | || ||||| || || |||| |||| Sbjct 211378 GTCTTGGATCTTTGCCTTGA-CGTTGTCAATGGTATCGCTACTCTCTACCTCCAAAGTGA 211436 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || || || || || ||||| |||||||| ||||| Sbjct 211437 TCGTCTTTCCGGTGAGGGTTTTGACAAAGATCTGCAT 211473 >seq221 Length=819827 Score = 107 bits (118), Expect = 2e-18 Identities = 157/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 46376 AAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGC 46435 ||||||||||| || || | || ||||| || || |||||||| || || || | Sbjct 382187 AAACGCAACACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCCGACAGGGTCCTT 382128 Query 46436 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCC 46495 | || || ||||||||||| || || ||||| | || || |||| || | | |||| Sbjct 382127 CCATCCTCCAGCTGCTTGCCCGCAAAGATCAATCTTTGTTGATCGGGAGGAATACCCTCC 382068 Query 46496 TTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACC 46552 |||||| |||||| ||||| | | | ||||| |||| || || |||| | Sbjct 382067 TTGTCCTGGATCTTGGCCTTGACATTGTCGATAGTGTCCGAGCTC---TCGACCTCCAGC 382011 Query 46553 GTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||||| ||||| |||| || || |||||||||||||| Sbjct 382010 GTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 381970 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| | || |||||||| || || || || ||||| ||||||||||| Sbjct 381968 CCTCCGCGAAGACGAAGGACGAGATGCAAGGTGCTTTCTTTCTGGATGTTGTAGTCGGAC 381909 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||| | | || ||||||||||| ||||| || |||| ||||| ||||||| || Sbjct 381908 AAAGTTCTGCCATCCTCGAGCTGCTTTCCGGCAAAGATCAGACGCTGTTGGTCGGGAGGA 381849 Query 46487 ACGCTCTCCTTGTCCATGATCTT 46509 | || ||| ||||| |||||| Sbjct 381848 ATGCCCTCTTTGTCTTGGATCTT 381826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565234973242200