Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq233 233 2e-56 seq275 107 2e-18 seq221 98.7 1e-15 >seq233 Length=223772 Score = 233 bits (258), Expect = 2e-56 Identities = 386/552 (70%), Gaps = 9/552 (2%) Strand=Plus/Plus Query 132891 CAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGT 132950 || ||| ||||||||| || | || ||||| | ||| ||||| || ||| ||| | Sbjct 43219 CAGGCAGGCAAAGTCGGTGTGAAGACCTTCGTCTCGGGAGATGAGCTCATTGGAGAAGCT 43278 Query 132951 CAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAA 133010 || || ||||| || || | || ||||||||||| |||| || ||| || || || Sbjct 43279 CAGTCCCGGCATCAGACCCCTCTTCTTGAGCCAAAAGATGGAAGCAAAAGATCCGGAGAA 43338 Query 133011 GAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCT 133070 ||||| |||||||||||| || || || | ||| | |||| ||| | | | | || Sbjct 43339 GAAGATGCCCTCGACGGCGGCAAAGGCGATCAGTCTCTCGGAGAAGGAAGATCGTCTGTC 43398 Query 133071 GGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCAC-GGCATCGTTTCGATGG 133129 || |||||| | || ||||| || ||||||| ||||| ||| || ||||| |||| || Sbjct 43399 GGAGATCCACCTGAGTGCCCAGTCAGCCTTTTGCTTGAC-CACGGGAATCGTCTCGACGG 43457 Query 133130 CGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGA 133187 | | ||||| | | | ||||| | || ||| | || ||||||||||| || Sbjct 43458 CATCAAACAA--GAACTCTCTCTGCTCTGGTTCGCGGATATAAGTGTCGATGAGCAGAGA 43515 Query 133188 ATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTC 133247 || | |||||||| | ||||||||| |||||| || ||||||||||| | ||||| Sbjct 43516 GTAAGTCTCCGAGTGAATGTTCTCCATCATGATTTGGAAACCGTAAAAGCATCTGGCCTC 43575 Query 133248 GACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCT 133307 | | ||||| ||||| | ||| ||||| |||| || || || ||||||||||| Sbjct 43576 TGCTGCTTGCACCTCTTGCGAGAATCGCTCCACCAAGTTCTCATTCACGATGCCGTCCGA 43635 Query 133308 GGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTT---CAAGCG 133364 || || || ||||| |||||||| || || || | ||| |||||||| | | Sbjct 43636 AGCTGCAAAGAAGGCGAGCACGTGAGAGACAAAGTGCCTCTCATTGTCGTTGAGCTTGTT 43695 Query 133365 CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTC 133424 ||||| || || ||||||| || || | || || |||||||||| || ||||| Sbjct 43696 GTCCCAATCATGCAGGTCCTTGCTGAGATCGATTTCTTCTGCGGTCCAAAAAGATGCCTC 43755 Query 133425 GGCTTTTTTGTA 133436 || || ||||| Sbjct 43756 TGCCTTCTTGTA 43767 Score = 118 bits (130), Expect = 1e-21 Identities = 160/218 (73%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| ||||| || || || ||||| | || || ||| | | Sbjct 211473 ATGCAGATCTTTGTCAAAACCCTCACCGGAAAGACGATCACTTTGGAGGTAGAGAGTAGC 211414 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || | ||| |||| |||||||| || ||||| | || || Sbjct 211413 GATACCATTGACAACG-TCAAGGCAAAGATCCAAGACAAAGAAGGCATTCCTCCTGATCA 211355 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||||| || |||||||| || || |||| |||||||| ||||||||| Sbjct 211354 GCAACGCCTCATTTTTGCTGGCAAACAACTCGAAGACGGTCGCACCCTTTCCGACTACAA 211295 Query 38423 CATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGT 38459 ||| || ||||| ||| ||||| || |||||||| ||| Sbjct 211294 CATTCAGAAGGAGAGC-ACGCTTCACTTGGTGCTTCGT 211258 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || || || || || | || || ||| || | Sbjct 211245 ATGCAAATTTTCGTGAAGACTCTCACTGGAAAGACGATTACTTTGGAGGTGGAGAGCAGC 211186 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | ||| || | ||||||||||| || || ||||||| Sbjct 211185 GATACCATTGACAATGTCAAGGCAAAGATTCAAGACAAAGAGGGCATCCCACCCGACCAG 211126 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || ||||||| | || ||||| || || || |||| ||||| || ||||||||| Sbjct 211125 CAAAGGCTCATCTTTGCCGGCAAGCAACTCGAAGACGGTCGCACGCTTTCTGACTACAAC 211066 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| |||||| || || ||||||||||| ||| || | || || Sbjct 211065 ATCCAGAAGGAAAGTACTCTTCATTTGGTGCTTCGTCTGCGCGGTGG 211019 Score = 105 bits (116), Expect = 7e-18 Identities = 122/162 (75%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 || ||||| || ||||| | || |||||| || | |||| | | |||| | |||| Sbjct 212130 ACTGGCAAGACTATCACTCTTGAAGTCGAGTCCTCTGACACTATCGACAACG-TCAAAGC 212072 Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386 || |||| ||||| ||||| |||||| | |||||||| || ||||| | ||| ||||| Sbjct 212071 CAAGATCCAAGACAAGGAGGGTATTCCCCCTGACCAACAACGTCTCATCTTCGCAGGCAA 212012 Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA 38428 ||||| || |||| |||||| | | ||||||||||||||| Sbjct 212011 GCAGCTCGAAGACGGCCGCACCTTGAGCGACTACAACATCCA 211970 >seq275 Length=588737 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || ||||| || ||||||||| | || |||||| | | Sbjct 39197 ATGCAGATTTTCGTCAAGACCCTGACGGGTAAGACCATCACCTTGGAGGTCGAGTCTTCG 39256 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | || |||| ||||| ||||||||||| | |||||| Sbjct 39257 GACACGATCGACAATGTGAAGGCCAAGATCCAAGACAAGGAGGGAATTCCTCCTGACCAA 39316 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||| | ||| ||||| ||||| || || | | || || |||||||||| Sbjct 39317 CAACGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCAGGACTCTGTCCGACTACAAC 39376 Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| ||| || || || | ||||| || Sbjct 39377 ATCCAGAAGGAGAGC-ACTCTTCACCTTGTGCTCCG 39411 >seq221 Length=819827 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || | || ||||| |||||||| | || |||||| | | Sbjct 381970 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACCATCACGCTGGAGGTCGAGAGCTCG 382029 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | || |||| ||||| ||||| ||||| |||| ||| Sbjct 382030 GACACTATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCTCCCGATCAA 382089 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || | | || | |||||||| |||||||| || | | ||||| ||||||||| Sbjct 382090 CAAAGATTGATCTTTGCGGGCAAGCAGCTGGAGGATGGAAGGACCCTGTCGGACTACAAC 382149 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || |||||| | || || || | ||| |||||||| | ||||| Sbjct 382150 ATTCAGAAGGAATCCACTCTCCACCTCGTGTTGCGTTTGCGTGGCGG 382196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500169767702400