Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq249 264 1e-65 seq265 98.7 1e-15 >seq249 Length=106399 Score = 264 bits (292), Expect = 1e-65 Identities = 732/1115 (66%), Gaps = 12/1115 (1%) Strand=Plus/Plus Query 6710 TTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCTGGAATA 6769 || ||||| | ||||| | || | ||||| || ||| | || |||| ||||| Sbjct 22018 TTGGCATCCAAGTCGAAGGTGACCTCGATTTGAGGAACACCGCGAGGAGCGGGAGGAATG 22077 Query 6770 CCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTCACCTTCA 6829 || || | ||||| | || || | |||| ||| ||| ||||||||| || Sbjct 22078 CCGGTGAGCTCAAACTTGCCCAGCAGGTTGTTGTCCTTCGTGCGAGCACGTTCACCCTCG 22137 Query 6830 TAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTT-GTTCTTT 6888 |||||| || ||| |||| || || || || |||||||||| | |||| Sbjct 22138 AAGACTTGGATCAGCACACCAGGCTGGTTGTCGGCGTAGGTGGAGAAGATTTCGCTCTT- 22196 Query 6889 CTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTTC 6948 ||| | |||| || || || | | || | | || | | |||||| ||||| Sbjct 22197 CTTGGTGGGAACGGTGGTGTTGCGCTTGATGAGAGCAGTGAAGACACCACCGGCGGTTTC 22256 Query 6949 GAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCCC 7008 || || | |||||| | ||||| | || || || |||||| |||| Sbjct 22257 GATACCCATGCTCAGAGGCGCAACGTCGAGCAGCAAGAGATCTTGAGTCTTTTCGGATGT 22316 Query 7009 TTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTT 7068 ||||| | | ||||| || || || | ||| ||||| ||||| ||||| ||||| || Sbjct 22317 GTCACCGCTGAGAATGGCTGCCTGCACGGCCGCACCGTAGGCGACGGCCTCGTCGGGATT 22376 Query 7069 AATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGG 7128 || | || || | || |||||| ||| | || | || | || | || Sbjct 22377 GATGCTCTTGTTAGGCTCGCGACCGTTGAAAAAGTCTCGGAGCAGCTTCTGTACACGAGG 22436 Query 7129 GATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGA 7188 ||| || || || || ||||| | ||||| || | || |||| || || |||||||| Sbjct 22437 GATACGCGTGGAACCGCCGACGAGGACGATCTCGTGAACGCTCGACTTGTCAATCTTTGA 22496 Query 7189 GTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTC 7248 ||| || || |||||||| || || || | | ||| | ||| || || || Sbjct 22497 GTCGCGCAGGACCTTTTCGACGGGCTCGATGGTGTGAGAGAAGAGGTCGCCGCAGAGCTC 22556 Query 7249 CTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAAT 7308 ||| ||||| ||||| || ||||| || || || || | ||| || | ||||| || || Sbjct 22557 CTCGAAACGAGCACGAGTGATGGAGGTGTAAAAGTCGATGCCCTCAAACAACGAGTCGAT 22616 Query 7309 TTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCG 7368 || ||||| || || || | ||||| | || ||||| || ||||| || || ||||| Sbjct 22617 CTCGATGGTGGTCTGAGCTGCAGAAGACAGGGTACGCTTCGCACGCTCGCAAGCAGTTCG 22676 Query 7369 TAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTC 7428 | ||||||||| || || | ||| || | |||||||| | || | || || || Sbjct 22677 CAGACGACGAAGAGCGCGAGCGTTGGAGGTGAGGTCTTTCTTGTTCTTTCTCTTGAATTC 22736 Query 7429 TT---CAGAGAAGT-GTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTAT 7484 || || || || | | || || || || ||||| ||||| | ||| || | Sbjct 22737 TTGGACAAAGTGGTTGACCAACCGGTTG----TCAAAGTCTTCGCCACCAAGGTGAGTGT 22792 Query 7485 CCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAA 7544 | || ||||| || ||||| || |||||||| | || || | || | || || || | Sbjct 22793 CACCAGCGGTGGCCTTGACCTCGAAGATACCCTCCTCGATAGTCAAGAGGGACACGTCGA 22852 Query 7545 ACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGA 7604 | |||||||| |||| || ||||| || |||||| | ||| | || ||||| |||| Sbjct 22853 ATGTACCACCTCCCAAATCGAAAATCAGAACGTTCTTCTCGCCCTCAGACTTCTTGTCGA 22912 Query 7605 GACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAG 7664 | ||||| || || || || || || || || || || || || || ||| || |||| Sbjct 22913 GGCCGTATGCAATGGCAGCTGCGGTGGGCTCGTTGATGATGCGGAGCACGTTGAGACCAG 22972 Query 7665 CAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCG 7724 ||| | | || || || || || || ||||| || ||||||||||| || || || | Sbjct 22973 AAATGATACCAGCGTCCTTGGTAGCCTGACGTTGTGAGTCGTTAAAGTATGCAGGTACAG 23032 Query 7725 TTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTG- 7783 | ||||| |||||| ||||| | ||| || || | || || | || ||| ||| Sbjct 23033 TCACGACGGCGTCCTTGACTGTGCCACCAAGGTAGGCCTCTGCAGTCTCGCGCATCTTGA 23092 Query 7784 GTAAGAACCATCGATGAAATCTCTTCAGCCGCAAA 7818 | ||| ||||| ||||| ||||| || | || ||| Sbjct 23093 GCAAG-ACCATGGATGAGATCTCCTCTGGCGTAAA 23126 Score = 82.4 bits (90), Expect = 1e-10 Identities = 126/179 (70%), Gaps = 3/179 (2%) Strand=Plus/Plus Query 7964 GTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTA 8023 ||||| | |||||||| || ||||||||| || || || ||||| | || || Sbjct 23339 GTGTTGTGAGGGTTCATTGCGACTTGGTTCTTGGCAGCATCTCCGATCAATCGCTCCGAG 23398 Query 8024 TTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATT 8083 | | || || || ||||| || || || || || || || ||||| || ||||| | Sbjct 23399 TCT---GTGAAAGCAACGTATGAGGGAGTGGTGCGGTTACCCTGGTCATTGGCAATGACC 23455 Query 8084 TCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACC 8142 || || ||||| ||||||||||| | ||||| || || ||||| || | ||| || || Sbjct 23456 TCCACTCGGTCATTTTGCCAGACAGCAACGCAAGAGTAGGTTGTGCCGAGATCGATTCC 23514 >seq265 Length=1618306 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || |||| ||||||| || ||||| || |||||||| ||||| |||| | || Sbjct 682378 TCAAAGTCTTGTCCACCCAGATGAGTATCACCGGCGGTCGCCTTGACAGCAAACACGCCA 682319 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || ||||| | || || ||||| || || ||||| || || || |||||||| ||| Sbjct 682318 CCAGTGATGTTGAGCAGAGAGACATCGAATGTGCCACCTCCAAGATCGAAAATGAGAACG 682259 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 ||| | ||| | | || ||||||||||| || || || || || || || || Sbjct 682258 TTCTTCTCGGTGGATGACTTGGAGTCGAGACCGTAGGCAATGGCTGCAGCGGTGGGCTCG 682199 Query 7637 TTAATAATACGAAGACAGTTC-AGGCCAGCAATAGT 7671 || || ||||| ||| | ||| || |||||||| || Sbjct 682198 TTGATGATACGCAGA-ACTTCGAGACCAGCAATGGT 682164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635128949507400