Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq318 150 2e-31 seq233 107 2e-18 >seq318 Length=903324 Score = 150 bits (166), Expect = 2e-31 Identities = 1100/1748 (63%), Gaps = 51/1748 (3%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| | ||||| ||||| | || ||||| || || || | ||||| || Sbjct 23829 CCTCAGCACATGATTATGCGCGTCGCCGTTGGCATCCACGGCGATGACGTCGATTCCGTG 23888 Query 111672 TTGGAGACATACGACAAGATGTCCCGTG-GTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||| ||| || |||||| ||| || | |||||| | || |||||||| Sbjct 23889 ATTGAGACGTACAACCTCATGTCCGAAAAGTACTTT-ACCCACGCCTCCCCGACCCTCTT 23947 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTAT-TGCAAACAAGGAGG 111789 |||||| || || || || ||| | || || ||||| | |||| ||||| | Sbjct 23948 CAACGCCGGCACGCCTCACCCTCAACTCTCGTCGTGCTTCCTCGTCTGCATG-AAGGATG 24006 Query 111790 ATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTG 111849 | ||| | ||||| |||| |||||||| || ||| || ||| || | Sbjct 24007 ACAGCATCGACGGCATCTACGACACTCTCAAGACGTGCGCCATGATTAGCAAGACTGCCG 24066 Query 111850 GTGGTATCGGGATGCACATCCATGATGTCAGAGCCAAC--AAGTCTCGTATTAGAGGTAC 111907 ||||||| || || |||||| | | | | || | ||| | ||| ||| || Sbjct 24067 GTGGTATAGGCCTGAGCATCCACAACATTCGCGGCACCGGAAGCTAC--ATTGCAGGCAC 24124 Query 111908 AAATGG-TCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 111966 ||||| | | || | || || | || ||||| || || || ||| ||| || |||| Sbjct 24125 CAATGGCTTTAGCA-ACGGCATCGTCCCCATGCTGCGAGTCTTCAACAACACTGCACGCT 24183 Query 111967 ATGTAAACCAAGCTGGGCGTCGCAAGGGATCTATCGCAGT--CTATCTT----GAGCCAT 112020 | || |||||| ||| |||| | || ||| | | |||| ||||| | Sbjct 24184 ACGTTGACCAAGGTGGCAA---CAAGAGGCCTGGCGCCTTTGCCATCTACGCCGAGCCCT 24240 Query 112021 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGC 112080 ||||| | || || | |||||||| || |||| || || || | ||||| | || Sbjct 24241 GGCACTCTGACATTTTCGAGTTCCTGGACCTGCGCAAGAATCACGGAAAGGAGGAAGTGC 24300 Query 112081 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 112140 | ||||| || |||| ||| || ||||| ||||| |||||||||||| | || || Sbjct 24301 GAGCACGCGAGCTGTTCTACGCGCTGTGGATCCCAGACCTCTTCATGAAGCGTGTCGAAC 24360 Query 112141 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGG 112200 ||| ||| | ||| | | || || || || || || | |||| | | | Sbjct 24361 AGAACGGCGAGTGGAGCTTGATGTGCCCCAACGAGTGCCCTGGCATGGCCGAAGTCTATG 24420 Query 112201 GTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCG-ACG 112259 | |||||||||||||| || ||| ||||||||| | || |||| || | ||| || Sbjct 24421 GCGAGGAGTTTGAAGCGCTGTACGAAAAGTACGAAGCGGAGGGTCGCGCCA-AGCGCACC 24479 Query 112260 GTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 112318 | | || || | | ||||| | || || | | | |||| ||||||||| | || Sbjct 24480 AT-CAAGGCGCAAAAGCTGTGGTACGCCATCTTGGAAGCGCAAATCGAGACTGGCAACCC 24538 Query 112319 ATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 112378 | |||||| ||||| || || |||| ||||| || || ||||| |||| || Sbjct 24539 CTTTATGCTGTACAAGGATGCGGCGAACCGCAAGAGCAACCAGAAGAACCTGGGCACCAT 24598 Query 112379 CAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 112438 |||||| ||||| || || || ||| | || | | | ||| ||| || || Sbjct 24599 CAAGAGCAGTAACCTGTGCACCGAGATCATCGAGTACTCTGCGCCAGACGAGGTTGCCGT 24658 Query 112439 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGA 112498 || ||| | ||||| ||||| || || || | || | ||| ||| | | | Sbjct 24659 CTGCAACTTGGCATCCATCGCCCTGCCATCGTTCATCGACACTTCGACCAAGTCGTACAA 24718 Query 112499 TTATGAAAAACTCCACGAAGTTACGAA----AACTGTCACAAAAAACCTAAACAGAGTTA 112554 | | | ||||| |||| || | || | |||| | ||||| ||| | | | Sbjct 24719 CTTTAAGAAACTTCACGCCGTCGCAAAGGTCATCTGTGGC----AACCTGAACCGCATCA 24774 Query 112555 TTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAA 112614 | || || | || ||||| ||| || ||| || || | | |||||||| | Sbjct 24775 TCGACGTCAACTACTATCCCGTCGAGGAGGCGCGTCGTTCCAACTTCCGTCACCGTCCCA 24834 Query 112615 TTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCA-CGCATTTGAT 112673 | || |||| || |||||||| || |||| |||| | | ||| || || ||||| Sbjct 24835 TCGGCATCGGAGTGCAAGGTCTGGCCGATGCTTTCA-TGATCCTCGGCATGGCCTTTGAC 24893 Query 112674 TCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTT 112733 || ||||||| | |||| || || || ||||| || || |||||||| || Sbjct 24894 TCGCCCGAAGCGCGCAAGCTCAACAAGCAAATTTTCGAGACCATCTACCACGCCGCACTG 24953 Query 112734 GAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCA 112793 ||| || ||| | || | || ||||| || | |||| | || || || Sbjct 24954 GAGCGCTCTTGCGAGCTTGCCCAACGCGACGGTCCCTACCAGACCTACCAAGGCTCGCCC 25013 Query 112794 GCTTCACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTC--AC--- 112847 || || |||||| | ||| || | || ||||||| | | | | |||| || Sbjct 25014 GCCTC-CAAGGGAGAGCTGCAGTACGACATGTGGG-----GCGTCACACCTTCTGACTTG 25067 Query 112848 TACGACTGGGACGCTCTCAAG-GAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTT 112906 | || ||| | | || ||| | | | || ||| | |||||||| ||| || | Sbjct 25068 TGGGATTGGACCACGCTGAAGAGCAAG-ATTTCCGAGCACGGTCTTCGCAACTCGCTGCT 25126 Query 112907 GATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGA 112966 | | ||||| ||||| || ||||||||| | || || | || || ||||||||||| Sbjct 25127 GCTCGCACCCATGCCTACCGCCTCCACCTCTCAGATTCTCGGCTTCAACGAATGCTTTGA 25186 Query 112967 ACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA 113026 |||||||| | |||||||| | | | || || |||||||| ||||||| Sbjct 25187 GCCCTACACATCCAACATCTACACGCGTCGTGTGCTGGCCGGAGAGTTCCAAGTTGTCAA 25246 Query 113027 CAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCT 113086 | | | || || || ||| ||||| ||| ||| ||||| | | Sbjct 25247 CCCGTGGTTGCTGCGCGAGCTGGTCGAGCAGGGTCTGTGGAATGAGGGCATGAAAAACCG 25306 Query 113087 CATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAA 113146 ||| | || || ||||| ||||| || | || || || || ||| Sbjct 25307 CATCATTGCCCATGGCGGCTCCATCCAAAACGTTCCCGGCATACCCGACAGGATCAAGGC 25366 Query 113147 GTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCG 113206 | | ||| || || ||||| || | ||| |||| || ||||| || ||||| Sbjct 25367 GCTCTACAAGACGGTGTGGGAGATTTCGCAAAAGTCGATCATCGAGATGGCTGCCGATCG 25426 Query 113207 TGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCA--TGGAAAGTCCAACGATG 113264 ||| ||||| ||||||||||| |||| ||||| || || || ||| | Sbjct 25427 TGGAGCATTCATCTGCCAAAGTCAAAGCTTGAA--CATTCATCTGCAATCGCCGACGTTT 25484 Query 113265 TCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTAT 113324 ||||| | || |||||| | ||| | ||||||||||| ||||| ||||| | ||| Sbjct 25485 GGACAGCTCACCTCGATGCACTTTTACGGCTGGAAGAAGGGACTCAAGACGGGCACGTAC 25544 Query 113325 TACCTCCG 113332 || || || Sbjct 25545 TATCTGCG 25552 >seq233 Length=223772 Score = 107 bits (118), Expect = 2e-18 Identities = 123/163 (75%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 102170 TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTC 102229 |||||| | ||| |||| |||| ||||| || ||||| ||||||||||| || || Sbjct 43387 TTCCTTCTCCGAGAGACTGATCGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGATC 43328 Query 102230 CTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 102288 || ||| | || | ||||||||||||| | ||||| ||||| || || ||||||||| Sbjct 43327 TTT-TGCTTCCATCTTTTGGCTCAAGAAGAGGGGTCTGATGCCGGGACTGAGCTTCTCCA 43269 Query 102289 ACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 | ||||| ||||| || ||||| || || ||| || ||||| Sbjct 43268 ATGAGCTCATCTCCCGAGACGAAGGTCTTCACACCGACTTTGC 43226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620738636749200