Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq233 118 1e-21 seq118 84.2 3e-11 >seq233 Length=223772 Score = 118 bits (130), Expect = 1e-21 Identities = 151/205 (74%), Gaps = 5/205 (2%) Strand=Plus/Plus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || ||||| ||||| || || |||||||||||||| ||||| ||||| Sbjct 43225 GGCAAAGTCGGTGTGAAGACCTTCGTCTCGGGAGATGAGCTCATTGGAGAAGCTCAGTCC 43284 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 ||||| || || || ||||| ||||||||||||| | |||| ||| || |||||||| Sbjct 43285 CGGCATCAGACCCCTCTTCTTGAGCCAAAAGATGGAAGCAAAAGATCCGGAGAAGAAGAT 43344 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACT-TGTC---GA 119670 |||||| || ||| || |||| || | ||| | | |||| || | |||| || Sbjct 43345 GCCCTCGACGGCGGCAAAGGCGATCAGTCTCTC-GGAGAAGGAAGATCGTCTGTCGGAGA 43403 Query 119671 ACCACTTGAGAGCCCAGTTGGCCTT 119695 |||| |||| ||||||| ||||| Sbjct 43404 TCCACCTGAGTGCCCAGTCAGCCTT 43428 >seq118 Length=767018 Score = 84.2 bits (92), Expect = 3e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 11808 GAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGG 11867 ||| |||||| || ||| || || | || || || || |||||||| ||||| || Sbjct 575106 GAATGGAACACCAGCCTCTCCGGCCGTAGCCTTGGCCAGCAGCGTCTTACCAGTACCGGG 575047 Query 11868 TGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGG 11927 | || | |||| |||||| | || ||||||||||| | ||| |||||||| Sbjct 575046 AGGTCCGGAAAGAATGGCGCCCCTAGGAATCTTGGCACCGAGCCGCTCGTATCGCTCAGG 574987 Query 11928 CTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCGATACC 11981 |||||||||||||| || | |||| | ||| |||||||| ||| ||||| Sbjct 574986 CTTCTTGAGGAAGTTGACGAACTCCATGATTTCTTCCTTGGCCTCGTCCATACC 574933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588972429333000