Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq318 141 1e-28 seq233 107 2e-18 >seq318 Length=903324 Score = 141 bits (156), Expect = 1e-28 Identities = 554/859 (64%), Gaps = 19/859 (2%) Strand=Plus/Minus Query 106456 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 106515 ||| |||||||| |||||||| ||||| || || ||| || | | |||||| | Sbjct 24686 TGGCAGGGCGATGGATGCCAAGTTGCAGACGGCAACCTCGTCTGGCGCAGAGTACTCGAT 24627 Query 106516 AATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTT 106575 || || || |||| ||| ||||| || || |||| ||||| ||||| ||||| Sbjct 24626 GATCTCGGTGCACAGGTTACTGCTCTTGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCG 24567 Query 106576 GTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAAT 106635 ||| |||||||||||| ||||| |||| | || ||||| | || | | | || Sbjct 24566 GTTCGCCGCATCCTTGTACAGCATAAAGGGGTTGCCAGTCTCGATTTGCGCTTCCAAGAT 24507 Query 106636 TGCCTTCCACA-CATCGGCGGCTGGTACAATGGCG---TTGGCCCGTCCCTCCGCCTCGT 106691 || | ||||| | | ||| || | |||| | ||||| || |||||||| |||| Sbjct 24506 GGCGTACCACAGCTTTTGCGCCTTG----ATGGTGCGCTTGGCGCGACCCTCCGCTTCGT 24451 Query 106692 ACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGT 106751 ||||| ||| || |||||||||||||| || | |||| | || || || || Sbjct 24450 ACTTTTCGTACAGCGCTTCAAACTCCTCGCCATAGACTTCGGCCATGCCAGGGCACTCGT 24391 Query 106752 CTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAA 106811 || || | | ||| | || || || || ||||||||||| |||||||| | Sbjct 24390 TGGGGCACATCAAGCTCCACTCGCCGTTCTGTTCGACACGCTTCATGAAGAGGTCTGGGA 24331 Query 106812 TCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTA 106871 ||||||| | | || || || | || | || || | || || || || | Sbjct 24330 TCCACAGCGCGTAGAACAGCTCGCGTGCTCGCACTTCCTCCTTTCCGTGATTCTTGCGCA 24271 Query 106872 ACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAG----AT 106927 || |||||||| | || || | |||||| ||||| |||| || | | | Sbjct 24270 GGTCCAGGAACTCGAAAATGTCAGAGTGCCAGGGCTCGGCGTAGATGGCAAAGGCGCCAG 24211 Query 106928 CCCTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATT 106987 ||| | | | ||| |||| | || ||||| || ||| ||| || || || ||||| Sbjct 24210 GCCTCTTGTTG-CCACCTTGGTCAACGTAGCGTGCAGTGTTGTTGAAGACTCGCAGCATG 24152 Query 106988 GGAATAATACCATCTGATTGA-CCATTTGTCCCCCGAATACGAGATT-TATTGGCTCTCA 107045 || | || || | || | | ||||| || || ||| || || || | | | Sbjct 24151 GGGACGATGCCGT-TGCTAAAGCCATTGGTGCCTGCAAT-GTAGCTTCCGGTGCCGCGAA 24094 Query 107046 CATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAA 107105 | |||||| || || ||||| || || ||| || || ||| | | | Sbjct 24093 TGTTGTGGATGCTCAGGCCTATACCACCGGCAGTCTTGCTAATCATGGCGCACGTCTTGA 24034 Query 107106 GAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACA 107165 |||| | ||||| |||| ||| ||| ||||| || || |||||||| || | Sbjct 24033 GAGTGTCGTAGATGCCGTCGATGCTGTCATCCTTCATGCAGACGAGGAAGCACGACGAGA 23974 Query 107166 TCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC-CT 107224 || || || || || || ||||||||||| || | ||||| | || ||| | Sbjct 23973 GTTGAGGGTGAGGCGTGCCGGCGTTGAAGAGGGTCGGGGAGGCGTGGGT-AAAGTACTTT 23915 Query 107225 TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATG 107284 | |||||| || ||| ||||| | || ||||| | ||| || ||||||||||| | | Sbjct 23914 TCGGACATGAGGTTGTACGTCTCAATCACGGAATCGACGTCATCGCCGTGGATGCCAACG 23855 Query 107285 GCCACACGCATAAACATGT 107303 || || ||||||| ||||| Sbjct 23854 GCGACGCGCATAATCATGT 23836 >seq233 Length=223772 Score = 107 bits (118), Expect = 2e-18 Identities = 123/163 (75%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || ||| ||||| || |||||||| || || ||||| ||||||| || || Sbjct 43225 GGCAAAGTCGGTGTGAAGACCTTCGTCTCGGGAGATGAGCTCATTGGAGAAGCTCAGTCC 43284 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGA 117391 ||||| ||||||| |||||| | |||| | || | ||| || || ||||||||||||| Sbjct 43285 CGGCATCAGACCCCTCTTCTTGAGCCAAAAGATGGAAGCAAAA-GATCCGGAGAAGAAGA 43343 Query 117392 TACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGA 117434 | ||||| || ||||| || | || | ||||| |||||| Sbjct 43344 TGCCCTCGACGGCGGCAAAGGCGATCAGTCTCTCGGAGAAGGA 43386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589977223241400