Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq275 156 9e-33 seq233 143 6e-29 seq232 116 8e-21 seq221 107 4e-18 >seq275 Length=588737 Score = 156 bits (172), Expect = 9e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||||||| ||| || || || ||||| |||| ||||| || ||||| ||| Sbjct 39405 ACAAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGCCATCCTCG 39346 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || ||||||||||| |||||||| || || |||||||| Sbjct 39345 AGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCAGGAGGAATTCCCTCCTTGTCTTGG 39286 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || || || || ||||||||| || || || | ||| | ||||| Sbjct 39285 ATCTTGGCCTTCACATTGTCGATCGTGTCCGAAGACTCGACCTCCAAGGTGATGGTCTTA 39226 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | ||||| Sbjct 39225 CCCGTCAGGGTCTTGACGAAAATCTGCAT 39197 >seq233 Length=223772 Score = 143 bits (158), Expect = 6e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| ||| ||| || ||||| ||||| |||| ||| || | || |||||||| || Sbjct 211270 GTGAAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGACCGTCTTCGAGTTG 211329 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || || || || ||||| || || ||||||||||||||||||||||| || || Sbjct 211330 TTTGCCAGCAAAAATGAGGCGTTGCTGATCAGGAGGAATGCCTTCTTTGTCTTGGATCTT 211389 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | ||||||||| |||||||| || ||| || || || | || | ||||||||| || Sbjct 211390 TGCCTTGACGTTGTCAATGGTATCGCTACTCTCTACCTCCAAAGTGATCGTCTTTCCGGT 211449 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | ||||| Sbjct 211450 GAGGGTTTTGACAAAGATCTGCAT 211473 Score = 136 bits (150), Expect = 9e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 |||||||| || || || || ||||| || | ||| || | || |||||||| ||| Sbjct 211043 TGAAGAGTACTTTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGACCGTCTTCGAGTTGC 211102 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| || | ||| ||||| || || ||||| |||||||||||||| ||| Sbjct 211103 TTGCCGGCAAAGATGAGCCTTTGCTGGTCGGGTGGGATGCCCTCTTTGTCTTGAATCTTT 211162 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 |||||| || |||||||| || || ||||| || | |||| ||||||||| || Sbjct 211163 GCCTTGACATTGTCAATGGTATCGCTGCTCTCCACCTCCAAAGTAATCGTCTTTCCAGTG 211222 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | ||| || ||||| | |||||| Sbjct 211223 AGAGTCTTCACGAAAATTTGCAT 211245 Score = 109 bits (120), Expect = 1e-18 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || || |||||||| ||||| || ||||| || ||||||||||| || || ||||| || Sbjct 211618 CCGTCCTCGAGCTGTTTACCGGCAAAGATGAGGCGTTGTTGGTCAGGTGGGATGCCCTCC 211677 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||||||||| || |||||||| || |||||||| ||| || ||||| ||||| Sbjct 211678 TTGTCTTGAATCTTGGCTTTGACGTTGTCGATGGTGTCAGAAGACTCGACTTCGAGGGTG 211737 Query 195103 ACCGTCTTTCCTGTC 195117 | ||||| || ||| Sbjct 211738 ATGGTCTTGCCGGTC 211752 Score = 109 bits (120), Expect = 1e-18 Identities = 123/162 (76%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 194956 TGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAG 195014 || || ||||| ||| |||| || | || |||||||||||||| ||||||||||| || Sbjct 211970 TGGATGTTGTAGTCGCTCAAG-GTGCGGCCGTCTTCGAGCTGCTTGCCTGCGAAGATGAG 212028 Query 195015 TCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAAT 195074 ||||||||||| || ||||| || || |||||||| || || |||||||| || || Sbjct 212029 ACGTTGTTGGTCAGGGGGAATACCCTCCTTGTCTTGGATCTTGGCTTTGACGTTGTCGAT 212088 Query 195075 GGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||| || || |||||||| || | ||||| || || Sbjct 212089 AGTGTCAGAGGACTCGACTTCAAGAGTGATAGTCTTGCCAGT 212130 >seq232 Length=169745 Score = 116 bits (128), Expect = 8e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||| || || ||||| ||||| ||||| || || |||||||| || ||||| || || Sbjct 24069 CCATCCTCCAGTTGCTTGCCTGCAAAGATCAGACGCTGTTGGTCGGGTGGAATTCCCTCC 24010 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||||||||| || |||||| || || |||||||||||| ||||| |||||||| Sbjct 24009 TTGTCTTGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTG 23950 Query 195103 ACCGTCTTTCCTGT 195116 | |||||| || || Sbjct 23949 ATCGTCTTGCCCGT 23936 >seq221 Length=819827 Score = 107 bits (118), Expect = 4e-18 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 194950 TCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAG 195009 ||||| || || ||||| |||| | |||||| ||||| ||||||||||| || || ||| Sbjct 381932 TCTTTCTGGATGTTGTAGTCGGACAAAGTTCTGCCATCCTCGAGCTGCTTTCCGGCAAAG 381873 Query 195010 ATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || |||||||| ||||||||||| ||||||||||| || || Sbjct 381872 ATCAGACGCTGTTGGTCGGGAGGAATGCCCTCTTTGTCTTGGATCTT 381826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109474705611995