Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq233 104 2e-17 seq221 96.9 2e-15 >seq233 Length=223772 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||||| || ||||||||||| ||||| |||||| | || | || || Sbjct 211265 ACCAAGTGAAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGACCGTCTTCG 211324 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || ||||| || ||||| || || |||||||| || | || | || || ||||| Sbjct 211325 AGTTGTTTGCCAGCAAAAATGAGGCGTTGCTGATCAGGAGGAATGCCTTCTTTGTCTTGG 211384 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | || | ||| || || | || || || ||| Sbjct 211385 ATCTTTGCCTTGACGTTGTCAATGGTATCGCTACTCTCTACCTCCAAAGTGATCGTCTTT 211444 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || ||||| || || ||||||||||||||| Sbjct 211445 CCGGTGAGGGTTTTGACAAAGATCTGCATA 211474 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| |||| || ||||| ||||| ||||| ||||| ||||| | || | || || Sbjct 211037 ACCAAATGAAGAGTACTTTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGACCGTCTTCG 211096 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || || |||||||| || || | ||||||||| | || | ||||| ||||| | Sbjct 211097 AGTTGCTTGCCGGCAAAGATGAGCCTTTGCTGGTCGGGTGGGATGCCCTCTTTGTCTTGA 211156 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||| | || | || | | ||| || || | || || || ||| Sbjct 211157 ATCTTTGCCTTGACATTGTCAATGGTATCGCTGCTCTCCACCTCCAAAGTAATCGTCTTT 211216 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || |||||||||||||| || || |||||| Sbjct 211217 CCAGTGAGAGTCTTCACGAAAATTTGCATA 211246 >seq221 Length=819827 Score = 96.9 bits (106), Expect = 2e-15 Identities = 164/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || | ||| | ||| || | ||| | ||| ||| ||||||||||| |||||||| Sbjct 382196 CCGCCACGCAAACGCAACACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCCGAC 382137 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | | | |||| |||||||| || || ||||| || | || ||| || || | || Sbjct 382136 AGGGTCCTTCCATCCTCCAGCTGCTTGCCCGCAAAGATCAATCTTTGTTGATCGGGAGGA 382077 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG-GC-CTC 34930 | ||||||||||| ||||| ||||| || | ||||| | ||| || ||| Sbjct 382076 ATACCCTCCTTGTCCTGGATCTTGGCCTTGAC--AT--TGTCGATAGTGTCCGAGCTCTC 382021 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | || ||||| || || || | |||||||||||||| |||||| Sbjct 382020 GACCTCCAGCGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCATA 381969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324631681111080