Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq233 111 1e-18 seq249 98.7 8e-15 >seq233 Length=223772 Score = 111 bits (122), Expect = 1e-18 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || || | |||||| |||||||| || || ||||| |||| || || | Sbjct 211028 AGACGAAGCACCAAATGAAGAGTACTTTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGA 211087 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||||| ||||| || |||||||| || || |||||||| || || || || || ||| Sbjct 211088 CCGTCTTCGAGTTGCTTGCCGGCAAAGATGAGCCTTTGCTGGTCGGGTGGGATGCCCTCT 211147 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACAT-TCGAGAGT 563435 || |||||||| ||| || || ||||| ||||| || | || || | ||| Sbjct 211148 TTGTCTTGAATCTTTGCCTTGACATTGTCAATGGTATCGCTGCTC-TCCACCTCCAAAGT 211206 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || || || ||||| ||||| || ||||||||||||||| Sbjct 211207 AATCGTCTTTCCAGTGAGAGTCTTCACGAAAATTTGCATA 211246 Score = 95.1 bits (104), Expect = 1e-13 Identities = 155/221 (70%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 |||||| || || | ||||| || || || || ||| ||||| || | || || | Sbjct 211255 GAGACGAAGCACCAAGTGAAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCG 211314 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 ||||| |||||||| || |||||||| || | |||||||||||||||||| ||||| Sbjct 211315 ACCGTCTTCGAGTTGTTTGCCAGCAAAAATGAGGCGTTGCTGATCAGGAGGAATGCCTTC 211374 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGT-GTGAGTACATTCGAGAG 563434 ||| ||||| || ||| || || ||||| ||||| | | ||| || | || Sbjct 211375 TTTGTCTTGGATCTTTGCCTTGACGTTGTCAATGGTATCGCTACTCTCTAC-CTCCAAAG 211433 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | | || || || || || ||||| || || || |||||| Sbjct 211434 TGATCGTCTTTCCGGTGAGGGTTTTGACAAAGATCTGCATA 211474 >seq249 Length=106399 Score = 98.7 bits (108), Expect = 8e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 550390 AGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTAC 550449 ||| | ||| || || | |||||||| ||||| ||||| |||||||||||||| ||||| Sbjct 23052 AGTCAAGGACGCCGTCGTGACTGTACCTGCATACTTTAACGACTCACAACGTCAGGCTAC 22993 Query 550450 TAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGC 550509 || || ||||| ||| |||| || || || || || || ||||| || || || || Sbjct 22992 CAAGGACGCTGGTATCATTTCTGGTCTCAACGTGCTCCGCATCATCAACGAGCCCACCGC 22933 Query 550510 TGCTGCACTTGCATATGGACTTGATAA 550536 ||||| ||||||| || || || || Sbjct 22932 AGCTGCCATTGCATACGGCCTCGACAA 22906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029270351012650