Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq318 356 4e-93 seq233 217 3e-51 >seq318 Length=903324 Score = 356 bits (394), Expect = 4e-93 Identities = 1209/1854 (65%), Gaps = 72/1854 (4%) Strand=Plus/Minus Query 212574 GCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTTAGGCCCTTGCCCCAGCCGTGC 212633 || |||| | ||||||| ||||||||| |||| ||||| || ||||| |||||||| Sbjct 25567 GCGGCAGGCCTGGTGCGCAGATAGTACGTGCCCGTCTTGAGTCCCTTCTTCCAGCCGTAA 25508 Query 212634 ATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATTCTGGTCATCCTCGTGGCCCAGATGT 212693 | |||||| | ||||| | || || || || || || |||||| Sbjct 25507 AAGTGCATCGAGGTGAGCTG--TCC----AAACGTC-GGCGAT-----TG---CAGATGA 25463 Query 212694 AGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATA 212753 | ||||| | ||||| ||| ||||||| | | || || ||||| || ||||| Sbjct 25462 ATGTTCAAGCTTTGACTTTGGCAGATGAATGCTCCACGATCGGCAGCCATCTCGATGATC 25403 Query 212754 TCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGG--AAGC 212811 | || || | ||||||||| |||||| ||| | |||| |||| | || | || Sbjct 25402 GACTTTTGCGAAATCTCCCACACCGTCTTGTAGAGCGCCTTGA--TCCTGTCGGGTATGC 25345 Query 212812 CGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCA--GCTGCAGGCG--CATGTCCTCG 212867 |||| | ||| || | || || | |||| || | ||| | |||| |||| Sbjct 25344 CGGGAACGTTTTGGATGGAGCCGCC----ATGGGCAATGATGCGGTTTTTCATGCCCTCA 25289 Query 212868 TTCCAGAGGCCCCTGGTCTCCAGGCACTTG-ACCAGGTGAGGGTTGACTATCTGGAAGTC 212926 ||||| || ||| || || | || | | | || |||||||| | ||||| || Sbjct 25288 TTCCACAGACCC-TGCTCGACCAGCTCGCGCAGCAACCACGGGTTGACAACTTGGAACTC 25230 Query 212927 ACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTT 212986 || | ||||| | | | ||| | ||| || ||||||||||| | || |||||| Sbjct 25229 TCCGGCCAGCACACGACGCGTGTAGATGTTGGATGTGTAGGGCTCAAAGCATTCGTTGAA 25170 Query 212987 CCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCAC 213046 || |||||||| | ||| ||| || |||||||| || | ||| || ||| | | Sbjct 25169 GCCGAGAATCTGAGAGGTGGAGGCGGTAGGCATGGGTGCGAGCAGCAGCGAGTTGCGAAG 25110 Query 213047 TCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTC 213106 ||||||||| || || | ||| | ||| ||||| | |||| |||| Sbjct 25109 ACCGTGCTCGGAAATCTTGCTCTTCAGCGTGGTCCAATCCCACAAGTCAGA-AGGTG--- 25054 Query 213107 GTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTA 213166 | ||| ||||||||| |||||| || ||| |||| ||| ||||| Sbjct 25053 -----TGACGCCCCACATGTCGTACTGCAGCTCTCCCTTGGAGGCGGGCGAGCCTTGGTA 24999 Query 213167 AGAGGAGTAGGGGCCATGCTCCTTGGCCA-GCTCGCAGGACGCCTGCAGGGCAGCGTAGT 213225 | |||||| || | | | |||| || ||||||| || || ||| || |||| || Sbjct 24998 GGTCTGGTAGGGACCGT-CGCGTTGGGCAAGCTCGCAAGAGCGCTCCAGTGCGGCGTGGT 24940 Query 213226 AGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCA 213285 ||||||| || || || | | |||||||||| || || || || || || ||| Sbjct 24939 AGATGGTCTCGAAAATTTGCTTGTTGAGCTTGCGCGCTTCGGGCGA-GTCAAAGGC---- 24885 Query 213286 TCATGCGTTGGAACA------CATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGT 213339 ||||| ||| || |||| ||||| || || || |||||||||||||| | || Sbjct 24884 -CATGCCGAGGATCATGAAAGCATCGGCCAGACCTTGCACTCCGATGCCGATGGGACGGT 24826 Query 213340 GTCTCAGGTTAGA-CTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTG 213398 | | | ||| || | | || |||||| | ||| || ||||| ||||||||| | Sbjct 24825 GACGGAAGTTGGAACGACGCGC-CTCCTCGACGGGATAGTAGTTGACGTCGATGATGCGG 24767 Query 213399 TTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAAC-ACGTA 213457 || ||||||| | || || | ||| | || | || ||| || || | Sbjct 24766 TTCAGGTTGCCACAGATGACCTTTGCGACGGCGTGAAGTTTCTTAAAGTTGTACGACTTG 24707 Query 213458 GCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTC 213517 | | || | | ||| |||||||||||| |||| |||||| ||||| ||||| Sbjct 24706 GTCGAAGTGTCG-ATGAACGATGGCAGGGCGATGGATGCCAAGTTGCAGACGGCAACCTC 24648 Query 213518 CTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAG 213577 | | | | |||||| |||||||||||||||||||| |||| |||||||||||| Sbjct 24647 GTCTGGCGCAGAGTACTCGATGATCTCGGTGCACAGGTTACTGCTCTTGATGGTGCCCAG 24588 Query 213578 GTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGT 213637 ||||| ||||| ||| ||| || | ||||||||| ||||| ||||| || || Sbjct 24587 GTTCTTCTGGTTGCTCTTGCGGTTCGCCGCATCCTTGTACAGCATAAAGGGGTTGCCAGT 24528 Query 213638 CTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGAC 213697 ||| | || | ||| || | ||| || | ||||||| ||| || | Sbjct 24527 CTCGATTTGCGCTTCCAAGATGGCGTACCACAGCTTTTGCGCCTTGATGGTGCGCTTGGC 24468 Query 213698 AGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCT 213757 || || | ||||||| |||||| ||| | | || || | ||| |||| Sbjct 24467 GCGACCCTCCG---CTTCGTACTTTTCGTACAGCGCTTCAAACTCCTCGCCATAGACTTC 24411 Query 213758 GTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCT 213817 | ||| || || || ||| ||||| | |||||| || |||| | | ||| | Sbjct 24410 GGCCATGCCAGGGCACTCGTTGGGGCACATCAAGCTCCACTCGCCGTTCTGTTCGACACG 24351 Query 213818 CTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCC-TGGTCCTCCTCTCGT 213876 || |||||| ||||| |||| |||||||||| |||||| || | || || || || | Sbjct 24350 CTTCATGAAGAGGTCTGGGATCCACAGCGCGTAGAACAGCTCGCGTGCTCGCACT-TCCT 24292 Query 213877 CCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCA 213936 || ||| || |||||||| || || || || || ||||| | |||||| ||||| Sbjct 24291 CCTTTCCGTGATTCTTGCGCAGGTCCAGGAACTCGAAAATGTCAGAGTGCCAGGGCTCGG 24232 Query 213937 TGTAGATGGCAAAGGCGCCCGGCCTC---TTGCCGCCCTGGTCCAC-CAGCCTGGCCACC 213992 |||||||||||||||||| |||||| ||||| || ||||| || ||| | || Sbjct 24231 CGTAGATGGCAAAGGCGCCAGGCCTCTTGTTGCCACCTTGGTCAACGTAGCGT-GCAGTG 24173 Query 213993 ATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATA 214052 ||||||||| ||||| | ||| || | |||||| || ||||| || || || Sbjct 24172 TTGTTGAAGACTCGCAGCATGGGGACGATGCCGTTGCTAAAGCCATTGGTGCCTGCAATG 24113 Query 214053 TACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAG 214112 || |||| | | | | |||| ||| || ||||| |||||||| |||| Sbjct 24112 TAGCTTCCGGTGCCGCGAATGTTGTGGATGCTCAGGCCTATACCACCGGCAGTCTTGCTA 24053 Query 214113 ATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTC 214172 ||||||||||| | | | ||| || ||||||| | ||||||||||| | | | Sbjct 24052 ATCATGGCGCACGTCTTGAGAGTGTCGTAGATGCCGTCGATGCTGTCATCCTTCATGCAG 23993 Query 214173 AGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTG 214232 | | |||||| |||||| || || | || ||| | |||||| || || ||| | Sbjct 23992 ACGAGGAAGCACGACGAGAGTTGAGGGTGAGGCGTGCCGGCGTTGAAGAGGGTCGGGGAG 23933 Query 214233 GCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCG 214292 || ||| | | |||| | || | ||| |||| ||||| | || || || ||| Sbjct 23932 GCGTGGGTAAAGTACTTTTCGGACATGAGGTTGTACGTCTCAATCACGGAATCGACGTCA 23873 Query 214293 TGCTTGTGGATCTGTAGAGCGCACCTCATCAGCATGTGCTGGGGCC--TC-TCTATGGGT 214349 | |||||| | ||| | ||| | ||||||||| || | || | | | || Sbjct 23872 TCGCCGTGGATGCCAACGGCGACGCGCATAATCATGTGCTGAGGACGTTCGGCGACGCGT 23813 Query 214350 CCTTTGGGGCCCTTGAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAG 214403 || ||| || |||||||| || |||||||| |||||||| ||||||||| Sbjct 23812 CCATTGATGC---GAAGCAGGTATGATCGCTCCAGCGTCTTGAAGCCAAAGTAG 23762 >seq233 Length=223772 Score = 217 bits (240), Expect = 3e-51 Identities = 470/695 (68%), Gaps = 20/695 (3%) Strand=Plus/Plus Query 47988 ACATGAGGGTGATGTTCATGCCTATGAGGGACACGGGCAAAGCCTTTGTGAGAAACTCCT 48047 |||| | | || ||||||||| || | || ||||||| || | || || ||| ||| Sbjct 43083 ACATCAAGTTGGCGTTCATGCCAATCAAAGAGACGGGCAGTGCGTCGGTCAGGAACGCCT 43142 Query 48048 TCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGGT----TTG 48103 | || |||| || ||||| | || |||| || || | || ||| || Sbjct 43143 TTTCAATCTCGACAGCTTCGGTGATGATGCGCTTGAC-CGTGTCTGGATGGGCACGCTTC 43201 Query 48104 TTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGG 48163 ||| ||||| || | |||||| |||||||||||| |||| | |||||||| ||| Sbjct 43202 TTG---AGGTG---GGAAAAGAGCAGGCAGGCAAAGTCGGTGTGAAGACCTTCGTCTCGG 43255 Query 48164 CTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAA 48223 ||||||| | |||||||||| || || ||||| | ||||||| |||||||| || Sbjct 43256 GAGATGAGCTCATTGGAGAAGCTCAGTCCCGGCATCAGACCCCTCTTCTTGAGCCAAAAG 43315 Query 48224 ATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTC 48283 || | || ||||| || ||||||||||||||||| || || || || ||| | || ||| Sbjct 43316 ATGGAAGCAAAAGATCCGGAGAAGAAGATGCCCTCGACGGCGGCAAAGGCGATCAGTCTC 43375 Query 48284 TCTCCGAAAGAAG--CGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCT 48341 || ||| |||| ||| |||| |||||||| || |||||||| ||||| | || Sbjct 43376 TCGGAGAAGGAAGATCGT--CTGTCGGAGATCCACCTGAGTGCCCAGTCAGCCTTTTGCT 43433 Query 48342 TGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGC-A 48400 ||| || |||||||| | ||| || | || | || ||| || ||| Sbjct 43434 TGACCACGGGAATCGTCTCGACGGCATCAAACAAGAACTCTCTCTGCTCTG-GTTCGCGG 43492 Query 48401 ACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGG 48460 | ||| || || ||| | ||| |||| ||||| | ||||| || ||| ||| Sbjct 43493 ATATAAGTGTCGATGAGCAGAGAGTAAGTCTCCGAGTGAATGTTCTCCATCATGATTTGG 43552 Query 48461 AACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGA 48520 || ||||| ||| |||||||| | ||||| ||| ||||||| ||||| || Sbjct 43553 AAACCGTAAAAGCATCTGGCCTCTGCTGCTTGCACCTCTTGCGAGAATCGCTCCACCAAG 43612 Query 48521 TTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGG 48580 |||||||| || || || || ||||| ||||||||||| || || || | || || Sbjct 43613 TTCTCATTCACGATGCCGTCCGAAGCTGCAAAGAAGGCGAGCACGTGAGAGACAAAGTGC 43672 Query 48581 CGCTCGTTGTGGGTGAGAGCATT---CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCT 48637 | ||| |||| | |||| || ||| | || | ||| |||| || || | |||| Sbjct 43673 CTCTCATTGTCGTTGAGCTTGTTGTCCCAATCATGCAGGTCCTTGCTGAGATCGATTTCT 43732 Query 48638 TCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTA 48672 || | ||||| || || || ||| || ||||| Sbjct 43733 TCTGCGGTCCAAAAAGATGCCTCTGCCTTCTTGTA 43767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931527152582400