Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq318 320 3e-82 seq233 178 2e-39 >seq318 Length=903324 Score = 320 bits (354), Expect = 3e-82 Identities = 849/1272 (67%), Gaps = 45/1272 (4%) Strand=Plus/Minus Query 221371 GTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTCAGGGCAGCGTG 221430 ||| | || ||||||||||| ||| ||| | ||||||| || ||| || ||||| Sbjct 25001 GTAGGTCTGGTAGGGACCGTCGCGTTGGGCAAGCTCGCAAGAGCGCTCCAGTGCGGCGTG 24942 Query 221431 GTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG---GCCTCGGGAGAAGTGAAGGG 221487 |||||||||||| || || ||||||||| |||| || ||||| || |||| Sbjct 24941 GTAGATGGTCTCGAAAATTTGCTTGTTGAG---CTTGCGCGCTTCGGGCGAGTCAAAGGC 24885 Query 221488 CATACGCAGCATC-TGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGT 221546 ||| | || ||| |||||| | |||||||| || || |||||||| |||||||| | || Sbjct 24884 CATGCCGAGGATCATGAAAG-CATCGGCCAGACCTTGCACTCCGATGCCGATGGGACGGT 24826 Query 221547 GTCTCCTGTTGGAAGCGGC-CGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTG 221605 | | ||||||| || | ||| || |||||||| ||||||||||||| | | Sbjct 24825 GACGGAAGTTGGAA-CGACGCGCCTCCTCGACGGGATAGTAGTTGACGTCGATGATGCGG 24767 Query 221606 TTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAAC 221665 || ||||| | |||||| || | || || || |||| ||| || || Sbjct 24766 TTCAGGTTGCCACAGATGACCTTTGCGACGGCGTGAAGTTTCTTAAAGTTGTACG---AC 24710 Query 221666 TCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACAC 221725 | | |||| | | | | || | || ||||| | | |||| ||| || Sbjct 24709 TTG-----GTCGAAGTGTCGATGAACGATGGC----AGGGCGATGGATGCCAAGTTGCAG 24659 Query 221726 ACGGCCACCTCGTCCTTGTTG--GTATACTGTATGATCTCTGTACAGAGGTTGCTGCACT 221783 ||||| |||||||| || | | |||| |||||||| || || ||||| |||| || Sbjct 24658 ACGGCAACCTCGTC--TGGCGCAGAGTACTCGATGATCTCGGTGCACAGGTTACTGCTCT 24601 Query 221784 TGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAA 221843 ||||||| ||||||| || || || |||||| || || || |||||||| ||||||| Sbjct 24600 TGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTCGCCGCATCCTTGTACAGCATAA 24541 Query 221844 AGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGGCGC--T 221901 |||| ||||||||| | || || ||| || || ||| || || | |||| | Sbjct 24540 AGGGGTTGCCAGTCTCGATTTGCGCTTCCAAGATGGCGTACCACAG--CTTTTGCGCCTT 24483 Query 221902 CACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTT 221961 | || | |||| | |||||| | ||| ||| || ||| ||||||| Sbjct 24482 GATGGTGCGCTTGGCGCGACCCTCCGC---TTCGTACTTTTCGTACAGCGCTTCAAACTC 24426 Query 221962 TTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTT 222021 || || || | ||| ||| ||| || ||| | ||| ||||||| ||||| | Sbjct 24425 CTCGCCATAGACTTCGGCCATGCCAGGGCACTCGTTGGGGCACATCAAGCTCCACTCGCC 24366 Query 222022 GTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCT 222081 ||| | || ||| | || |||||||||||| |||||||||||||| | || || || | Sbjct 24365 GTTCTGTTCGACACGCTTCATGAAGAGGTCTGGGATCCACAGCGCGTAGAACAGCTCGCG 24306 Query 222082 GGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGC 222141 | ||| |||||| |||| || || | ||| |||| ||||| |||||||||| Sbjct 24305 TGCTCGCACTTCCTCCTTTCCGTGATTCTTGCGCAGGTCCAGGAACTCGAAAATGTCAGA 24246 Query 222142 GTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCAC 222201 |||||| ||||| |||| ||| | ||||| || | |||||||||||| || | || Sbjct 24245 GTGCCAGGGCTCGGCGTAGATGGCAAAGGCGCCAGGCCTCTTGTTGCCACCTTGGT-CAA 24187 Query 222202 CATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGT 222260 | | | ||| | |||||||| || || | || || | |||||| || | Sbjct 24186 CGTAGCGTGCAGTGTTGTTGAAGACTCGCAGCATGGGGACGATGCCGTTGCTAAAGCCAT 24127 Query 222261 TGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAG-ACATGCCGATACCA 222319 ||||||| |||||| ||| | | | | ||| ||| | || ||| |||||| Sbjct 24126 TGGTGCCTGCAATGTAGCTTCCGGTGCCGCGAATGTT-GTGGATGCTCAGGCCTATACCA 24068 Query 222320 CCGGC-GTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGA 222378 ||||| || || | | ||||||||||| ||||||||||||| |||||| || || Sbjct 24067 CCGGCAGTCTTGCTA-ATCATGGCGCACGTCTTGAGAGTGTCGTAGATGCCGTCGATGCT 24009 Query 222379 GTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTT 222438 ||| ||||| | | | || || || ||||| | |||| | | | | |||||| Sbjct 24008 GTCATCCTTCATGCAGACGAGGAAGCACGACGAGAGTTGAGGGTGAGGCGTGCCGGCGTT 23949 Query 222439 AAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTAC 222498 || || || || |||||| |||||||| ||||| || | ||||||||| | Sbjct 23948 GAAGAGGGTCGGGGAGGCGTGGGTAAAGTACTTTTCGGACATGAGGTTGTACGTCTCAAT 23889 Query 222499 GACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGGG 222558 || ||| || || ||||| || | |||| | ||| ||||| ||| || Sbjct 23888 CACGGAATCGACGTCATCGCCGTGGATGCCAACGGCGACGCGCATAATCATGTGCTGAGG 23829 Query 222559 CC--TC-TCCACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTGAA 222615 | || | || | || ||| || || |||||||| ||| ||||| |||||||| Sbjct 23828 ACGTTCGGCGACGCGTCCATTGATGC--GA-AGCAGGTATGATCGCTCCAGCGTCTTGAA 23772 Query 222616 CCCAAAGTAGTT 222627 ||||||||||| Sbjct 23771 GCCAAAGTAGTT 23760 >seq233 Length=223772 Score = 178 bits (196), Expect = 2e-39 Identities = 416/618 (67%), Gaps = 20/618 (3%) Strand=Plus/Minus Query 25513 TGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATC-CAA 25571 |||||||| ||||| || ||||| ||||||| || | | ||| || | | | ||| Sbjct 43743 TGGACCGCAGAAGAAATCGATCTCAGCAAGGACCTGCATGATTGGGACAA-CAAGCTCAA 43685 Query 25572 AGAC---GAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTAT 25628 ||| ||| ||| ||| || ||||| | || ||||||||||| || || || || Sbjct 43684 CGACAATGAGAGGCACTTTGTCTCTCACGTGCTCGCCTTCTTTGCAGCTTCGGACGGCAT 43625 Query 25629 AGTGAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTG 25688 ||||| ||||| || ||| ||||| | || ||||| | ||||||| || Sbjct 43624 CGTGAATGAGAACTTGGTGGAGCGATTCTCGCAAGAGGTGCAAGCAGCAGAGGCCAGATG 43565 Query 25689 TTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCT 25748 || ||||||||||| || || || || | ||||| ||| || | ||| | Sbjct 43564 CTTTTACGGTTTCCAAATCATGATGGAGAACATTCACTCGGAGACTTACTCTCTGCTCAT 43505 Query 25749 GATGACGTACATTACAGA--CGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCAC 25806 || || || || | || ||||||| || |||||| |||| ||||| Sbjct 43504 CGACACTTATATCCGCGAACCAGAGCAGAGAGAGTTCT--TGTTTGATGCCGTCGAGACG 43447 Query 25807 ATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGA-GCGC 25865 || ||| ||||| ||||| ||||| | | ||||||| | | |||| | | Sbjct 43446 ATTCCCGTGGTCAAGCAAAAGGCTGACTGGGCACTCAGGTGGATCTCC-GACAGACGATC 43388 Query 25866 TACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTC 25925 | | || |||| | ||| | |||||||| || || ||||||||||| ||| ||| || Sbjct 43387 TTCCTTCTCCGAGAGACTGATCGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGATC 43328 Query 25926 GTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAA 25985 ||||| ||||||| ||||||||| ||| ||| ||||| || ||| ||| ||||| Sbjct 43327 TTTTGCTTCCATCTTTTGGCTCAAGAAGAGGGGTCTGATGCCGGGACTGAGCTTCTCCAA 43268 Query 25986 CGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGG 26045 ||||||||| | | ||||| ||||| |||| || |||||||||||||||| | Sbjct 43267 TGAGCTCATCTCCCGAGACGAAGGTCTTCACACCGACTTTGCCTGCCTGCTCTTTTC--- 43211 Query 26046 CCACTTGCTCCACAAACCTTC---TCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGT 26102 |||| ||| | || | | | || ||| || ||| | | ||||||| || ||||| Sbjct 43210 CCAC---CTCAAGAAGCGTGCCCATCCAGACACGGTCAAGCGCATCATCACCGAAGCTGT 43154 Query 26103 GGAGATCGAGAAGGAGTT 26120 ||||| || |||| ||| Sbjct 43153 CGAGATTGAAAAGGCGTT 43136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928839168878400