Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq233 109 4e-18 seq275 107 1e-17 >seq233 Length=223772 Score = 109 bits (120), Expect = 4e-18 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || ||||| || || | |||||| |||||||| || | || || |||| || || Sbjct 211025 CGCAGACGAAGCACCAAATGAAGAGTACTTTCCTTCTGGATGTTGTAGTCAGAAAGCGTG 211084 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | ||||| |||||||| || ||||| || || | ||| || || || || || || Sbjct 211085 CGACCGTCTTCGAGTTGCTTGCCGGCAAAGATGAGCCTTTGCTGGTCGGGTGGGATGCCC 211144 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAG 480730 || ||||||||||||||| |||||| ||||| ||||| || | | | | ||| Sbjct 211145 TCTTTGTCTTGAATCTTTGCCTTGACATTGTCAATGGTATCGCTGCTCTCCACCTCCAA- 211203 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || ||||||||||| ||||||||||| Sbjct 211204 AGTAATCGTCTTTCCAGTGAGAGTCTTCACGAAAATTTG 211242 Score = 95.1 bits (104), Expect = 8e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| ||||| || ||||||||||| || ||||| |||||||||||||| ||||| ||| Sbjct 211319 TCTTCGAGTTGTTTGCCAGCAAAAATGAGGCGTTGCTGATCAGGAGGAATGCCTTCTTTG 211378 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 ||||| |||||| ||||| ||||| ||||| Sbjct 211379 TCTTGGATCTTTGCCTTGACGTTGTCAATGGTATC 211413 >seq275 Length=588737 Score = 107 bits (118), Expect = 1e-17 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 480558 CGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTA 480617 ||||| ||||| ||||| || || || || | || || || | ||||| ||| | Sbjct 39411 CGGAGCACAAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGCCA 39352 Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || || || ||||| ||||| || || ||||||||||| |||||||||||||| |||||| Sbjct 39351 TCCTCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCAGGAGGAATTCCCTCCTTG 39292 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAAT 480736 ||||| ||||| || ||| || || || || | | | | | ||| ||| || Sbjct 39291 TCTTGGATCTTGGCCTTCACATTGTCGATCGTGTCCGAAGACTCGACCTCCAA-GGTGAT 39233 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| || || ||||| |||||||| || Sbjct 39232 GGTCTTACCCGTCAGGGTCTTGACGAAAATCTG 39200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268158395996780