Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq318 145 9e-30 seq233 107 2e-18 >seq318 Length=903324 Score = 145 bits (160), Expect = 9e-30 Identities = 887/1398 (63%), Gaps = 39/1398 (3%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| | ||||| ||||| | ||||||||||| || ||| | ||||| || Sbjct 23829 CCTCAGCACATGATTATGCGCGTCGCCGTTGGCATCCACGGCGATGACGTCGATTCCGTG 23888 Query 75272 TTGGAGACATACGACAAGATGTCCCAAG-GTATGTTCATTCACGCAACACCAACCCTCTT 75330 | ||||| ||| || |||||| || ||| || | ||||| | || |||||||| Sbjct 23889 ATTGAGACGTACAACCTCATGTCCGAAAAGTACTTT-ACCCACGCCTCCCCGACCCTCTT 23947 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 ||| || || || || || || | || |||||||| || || ||||| || Sbjct 23948 CAACGCCGGCACGCCTCACCCTCAACTCTCGTCGTGCTTCCTCGTCTGCATGAAGGATGA 24007 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 | ||| |||| ||||| | ||||| | | ||| || || ||| || || Sbjct 24008 CAGCATCGACGGCATCTACGACACTCTCAAGACGTGCGCCATGATTAGCAAGACTGCCGG 24067 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATA-AATCTCGTATTCGGGGGACAA 75509 ||||| || || |||||| | | | | || || || ||| || || | Sbjct 24068 TGGTATAGGCCTGAGCATCCACAACATTCGCGGCACCGGAAGCTAC-ATTGCAGGCACCA 24126 Query 75510 ATGG-TCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 75568 |||| | | || | || || | || ||||| || || || ||| ||| || ||||| Sbjct 24127 ATGGCTTTAGCA-ACGGCATCGTCCCCATGCTGCGAGTCTTCAACAACACTGCACGCTAC 24185 Query 75569 GTAAATCAAGCGGGGCGTCGCAAGGGGT----CCATCGCGGTCTACTTGGAACCATGGCA 75624 || | |||| | ||| | ||| | || | || ||||| || || ||||| Sbjct 24186 GTTGACCAAG-GTGGCAACAAGAGGCCTGGCGCCTTTGCCATCTACGCCGAGCCCTGGCA 24244 Query 75625 TGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTG 75684 | || || | |||||||| || | || || || || | || || | || Sbjct 24245 CTCTGACATTTTCGAGTTCCTGGACCTGCGCAAGAATCACGGAAAGGAGGAAGTGCGAGC 24304 Query 75685 TAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGG 75744 | || || || | | |||||||| |||||||| ||||||||||| || || || Sbjct 24305 ACGCGAGCTGTTCTACGCGCTGTGGATCCCAGACCTCTTCATGAAGCGTGTCGAACAGAA 24364 Query 75745 TGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGA 75804 || | ||| | | || || || || || || | |||| | || || Sbjct 24365 CGGCGAGTGGAGCTTGATGTGCCCCAACGAGTGCCCTGGCATGGCCGAAGTCTATGGCGA 24424 Query 75805 GGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCG-ACTGTAC 75863 |||||||||||| || ||| |||||| |||| ||||||| | ||||| ||| || | | Sbjct 24425 GGAGTTTGAAGCGCTGTACGAAAAGTACGAAGCGGAGGGTCGCGCCAA-GCGCACCAT-C 24482 Query 75864 CAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATAT 75922 || ||| | | | ||| | || || | || | || | |||||||| | || | | Sbjct 24483 AAGGCGCAAAAGCTGTGGTACGCCATCTTGGAAGCGCAAATCGAGACTGGCAACCCCTTT 24542 Query 75923 ATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAG 75982 ||||| ||||||||||| ||| ||||| ||||| ||||| |||| || |||||| Sbjct 24543 ATGCTGTACAAGGATGCGGCGAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATCAAG 24602 Query 75983 AGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGC 76042 ||| || || ||||| || || | |||||| | | || ||| || || ||| Sbjct 24603 AGCAGTAACCTGTGCACCGAGATCATCGAGTACTCTGCGCCAGACGAGGTTGCCGTCTGC 24662 Query 76043 AATTTGGCATCAATCGCCCTTCCAAAGT--AT-GTCAAT--GAAGAGACTCGCACTTTTG 76097 || |||||||| |||||||| ||| || || | || | || | | ||| || Sbjct 24663 AACTTGGCATCCATCGCCCTGCCATCGTTCATCGACACTTCGACCA-AGTCGTAC----A 24717 Query 76098 ATTATGAAAAACTTCATGAAATCACAAAGAT----TGTTACCAAAAATCTAAACCGAGTC 76153 | | | | |||||||| | || ||||| | ||| | || || ||||| || Sbjct 24718 ACTTTAAGAAACTTCACGCCGTCGCAAAGGTCATCTGTGGC----AACCTGAACCGCATC 24773 Query 76154 ATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCT 76213 || ||| || | |||||||| ||| ||||| || || | || ||| | || Sbjct 24774 ATCGACGTCAACTACTATCCCGTCGAGGAGGCGCGTCGTTCCAACTTCCGTCACCGTCCC 24833 Query 76214 ATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGAT 76273 || || | || || |||||||| || |||| || || | | || || ||||| Sbjct 24834 ATCGGCATCGGAGTGCAAGGTCTGGCCGATGCTTTCATGATCCTCGGCATGGCCTTTGAC 24893 Query 76274 TCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTG 76333 || ||||| || | || | || || || ||||| || ||||| | ||| Sbjct 24894 TCGCCCGAAGCGCGCAAGCTCAACAAGCAAATTTTCGAGACCATCTACCACGCCGCACTG 24953 Query 76334 GAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCC 76393 ||| ||| || | || || | | ||| |||| |||| | | || || ||| Sbjct 24954 GAGCGCTCTTGCGAGCTTGCCCAACGCGACGGTCCCTACCAGACCTACCAAGGCTCGCCC 25013 Query 76394 GCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCT--CAACTACG 76451 || ||| | || | ||| |||| || ||||||| || | ||| || | | | Sbjct 25014 GCCTCCAAGGGAGAGCTGCAGTACGACATGTGGG-GCGTCACACC-TTCTGACTTGTGGG 25071 Query 76452 ACTGGGATGTTCTCAAG-GAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATG 76510 | ||| || ||| | | | || ||| | |||||||| ||| || || | Sbjct 25072 ATTGGACCACGCTGAAGAGCAAG-ATTTCCGAGCACGGTCTTCGCAACTCGCTGCTGCTC 25130 Query 76511 GCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCA 76570 ||||| ||||| || ||||||||| | || || | || || ||||||||||| || Sbjct 25131 GCACCCATGCCTACCGCCTCCACCTCTCAGATTCTCGGCTTCAACGAATGCTTTGAGCCC 25190 Query 76571 TACACAACAAACATCTAC 76588 |||||| | ||||||||| Sbjct 25191 TACACATCCAACATCTAC 25208 >seq233 Length=223772 Score = 107 bits (118), Expect = 2e-18 Identities = 123/163 (75%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 |||||| ||||| | || | || ||||| || ||||| |||||||||||||| || Sbjct 43386 TCCTTCTCCGAGAGACTGATCGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGATC- 43328 Query 65128 TTCTGC-GCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186 || ||| | || | |||| | |||||| ||||||| ||||| || || ||||||| || Sbjct 43327 TTTTGCTTCCATCTTTTGGCTCAAGAAGAGGGGTCTGATGCCGGGACTGAGCTTCTCCAA 43268 Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 ||| || || |||||||| || ||||| ||| || |||||| Sbjct 43267 TGAGCTCATCTCCCGAGACGAAGGTCTTCACACCGACTTTGCC 43225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596565983296800