Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq249 389 5e-103 seq221 174 2e-38 seq233 167 3e-36 seq232 127 3e-24 seq265 105 9e-18 seq243 96.9 5e-15 >seq249 Length=106399 Score = 389 bits (430), Expect = 5e-103 Identities = 844/1255 (67%), Gaps = 6/1255 (0%) Strand=Plus/Minus Query 195626 TTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCT 195685 ||| | || || || || || || ||||| ||| | |||||| |||||||| || | Sbjct 23126 TTTACGCCAGAGGAGATCTCATCCATGGTCTTGCTCAAGATGCGCGAGACTGCAGAGGCC 23067 Query 195686 TTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCA 195745 | | | ||| || || || || || || |||||||||||||| ||||| | || ||| Sbjct 23066 TACCTTGGTGGCACAGTCAAGGACGCCGTCGTGACTGTACCTGCATACTTTAACGACTCA 23007 Query 195746 CAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATC 195805 ||||| ||||| || |||||||||| | ||| | ||||| ||| || | || ||| Sbjct 23006 CAACGTCAGGCTACCAAGGACGCTGGTATCATTTCTGGTCTCAACGTGCTCCGCATCATC 22947 Query 195806 AATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAA 195865 || || || || || ||||| ||||| || || || |||||||| || | || || Sbjct 22946 AACGAGCCCACCGCAGCTGCCATTGCATACGGCCTCGACAAGAAGTCTGAGGGCGAGAAG 22887 Query 195866 AATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAA 195925 || || |||| || ||| | || |||||||| || || || || || | | ||| || Sbjct 22886 AACGTTCTGATTTTCGATTTGGGAGGTGGTACATTCGACGTGTCCCTCTTGACTATCGAG 22827 Query 195926 GGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTC 195985 | ||||| ||||| || ||||| || |||||||| ||||| || ||||| ||||| || Sbjct 22826 GAGGGTATCTTCGAGGTCAAGGCCACCGCTGGTGACACTCACCTTGGTGGCGAAGACTTT 22767 Query 195986 GATGCACGTCTTCTCCGTCA-TTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATAT 196044 || || | || || |||||| | || ||| ||||||| |||||||| | Sbjct 22766 GACAACCGGTTGGTCAACCACTTTGTC-CAAGAATTCAAGAGAAAGAACAAGAAAGACCT 22708 Query 196045 TTCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAAC 196104 | || || | ||||||||||| || | ||||| || || ||||| || || || Sbjct 22707 CACCTCCAACGCTCGCGCTCTTCGTCGTCTGCGAACTGCTTGCGAGCGTGCGAAGCGTAC 22648 Query 196105 TCTCTCTTCTACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTT 196164 || |||||| | ||||| || | | ||||| || ||||||||||| || || ||||| Sbjct 22647 CCTGTCTTCTGCAGCTCAGACCACCATCGAGATCGACTCGTTGTTTGAGGGCATCGACTT 22588 Query 196165 CTATACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTG 196224 || || | || || ||||| ||||| || ||| | | || | || | Sbjct 22587 TTACACCTCCATCACTCGTGCTCGTTTCGAGGAGCTCTGCGGCGACCTCTTCTCTCACAC 22528 Query 196225 TATGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGA 196284 || || || || ||| | || || || ||| ||||||| || ||||| | ||| | || Sbjct 22527 CATCGAGCCCGTCGAAAAGGTCCTGCGCGACTCAAAGATTGACAAGTCGAGCGTTCACGA 22468 Query 196285 AATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAG-CT 196343 || ||||| || || || || || ||||| || | || || ||| | | || || Sbjct 22467 GATCGTCCTCGTCGGCGGTTCCACGCGTATCCCTCGTGTACAGAAGCTGC-TCCGAGACT 22409 Query 196344 TCTTCAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTG 196403 | ||||| | || ||||| | ||||| || || || || || || || |||| Sbjct 22408 TTTTCAACGGTCGCGAGCCTAACAAGAGCATCAATCCCGACGAGGCCGTCGCCTACGGTG 22349 Query 196404 CGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAATAATAACGTC-CAAGATCTTCTG 196462 ||||||| ||||| || |||||| |||| ||| || | | |||||||| || Sbjct 22348 CGGCCGTGCAGGCAGCCATTCTCAGCGGTG-ACACATCCGAAAAGACTCAAGATCTCTTG 22290 Query 196463 CTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAA 196522 || || || ||||| || | | ||||| | ||||| || |||||||| | ||| Sbjct 22289 CTGCTCGACGTTGCGCCTCTGAGCATGGGTATCGAAACCGCCGGTGGTGTCTTCACTGCT 22230 Query 196523 ATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCC 196582 | || | | ||||| || |||| || |||||| || |||| || || || || Sbjct 22229 CTCATCAAGCGCAACACCACCGTTCCCACCAAGAAGAGCGAAATCTTCTCCACCTACGCC 22170 Query 196583 GATAATCAACCAGGTGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGAT 196642 || || || || ||||| | || ||||| | || || ||||| | || | ||||| Sbjct 22169 GACAACCAGCCTGGTGTGCTGATCCAAGTCTTCGAGGGTGAACGTGCTCGCACGAAGGAC 22110 Query 196643 AACCATCTACTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCA 196702 ||| | || || || | || || | || || ||||| | || || | |||||||| Sbjct 22109 AACAACCTGCTGGGCAAGTTTGAGCTCACCGGCATTCCTCCCGCTCCTCGCGGTGTTCCT 22050 Query 196703 CAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGAC 196762 || || | || |||||| | || || || || || ||||| | || |||| Sbjct 22049 CAAATCGAGGTCACCTTCGACTTGGATGCCAACTCCATCCTGAACGTGTCTGCCTCGGAC 21990 Query 196763 AAGGCTTCTGGCAAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAG 196822 ||| |||| ||||| ||||| |||| || ||||| |||||||| || || ||| Sbjct 21989 AAGACTTCCGGCAAGTCTGAGCGCATTGCCATCACCAACGACAAGGGCCGTCTCAGCAAG 21930 Query 196823 GAGGAAATTGAACGTATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAGG 196877 ||||| || || ||||| | || |||||||||| || ||| || |||| Sbjct 21929 GAGGAGATCGACGCCATGGTGGCCAACGCTGAAAAGTACAAGGCAGAGGATGAGG 21875 Score = 105 bits (116), Expect = 9e-18 Identities = 130/178 (73%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 195305 GGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTAGAG 195364 || |||||| | || || || ||||| || |||| ||| ||||||||||| || || ||| Sbjct 23514 GGAATCGATCTCGGCACAACCTACTCTTGCGTTGCTGTCTGGCAAAATGACCGAGTGGAG 23455 Query 195365 ATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAAT 195424 | || | |||||||| || ||||| || ||||| || |||||||| || ||||| Sbjct 23454 GTCATTGCCAATGACCAGGGTAACCGCACCACTCCCTCATACGTTGCTTTCACAGACTCG 23395 Query 195425 GAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTG 195482 || || | | |||||||| || || || || || ||||||||| ||| |||| Sbjct 23394 GAGCGATTGATCGGAGATGCTGCCAAGAACCAAGTCGCAATGAACCCTCACAACACTG 23337 >seq221 Length=819827 Score = 174 bits (192), Expect = 2e-38 Identities = 165/211 (78%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 ||||||||||||||||||| ||| | ||||| || || ||||| || ||||| ||| | Sbjct 381968 GTATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACCATCACGCTGGAGGTCGAGAGCT 382027 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 | ||||| ||||| || |||| |||||||| || || ||||| || ||||| ||||||| Sbjct 382028 CGGACACTATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCTCCCGATC 382087 Query 171980 AGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACA 172039 | ||| || | || ||||| || || ||||| || |||||| | ||||| | || |||| Sbjct 382088 AACAAAGATTGATCTTTGCGGGCAAGCAGCTGGAGGATGGAAGGACCCTGTCGGACTACA 382147 Query 172040 ACGTTCAAAAGGAGTCTACTCTACACCTTGT 172070 || |||| ||||| || ||||| ||||| || Sbjct 382148 ACATTCAGAAGGAATCCACTCTCCACCTCGT 382178 >seq233 Length=223772 Score = 167 bits (184), Expect = 3e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 ||||||| |||||||| |||||||| || ||||| || ||||| | ||||| ||| Sbjct 211475 GTATGCAGATCTTTGTCAAAACCCTCACCGGAAAGACGATCACTTTGGAGGTAGAGAGTA 211416 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 || || || || ||| |||| || ||||| ||||| || ||||||||||| || |||| Sbjct 211415 GCGATACCATTGACAACGTCAAGGCAAAGATCCAAGACAAAGAAGGCATTCCTCCTGATC 211356 Query 171980 AGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACA 172039 ||||||| || ||||||||||| ||||| || ||||| || || ||||| | || |||| Sbjct 211355 AGCAACGCCTCATTTTTGCTGGCAAACAACTCGAAGACGGTCGCACCCTTTCCGACTACA 211296 Query 172040 ACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 || |||| |||||| || || ||| | || || | || || |||||| Sbjct 211295 ACATTCAGAAGGAGAGCACGCTTCACTTGGTGCTTCGTCTCCGTGGTGGT 211246 Score = 145 bits (160), Expect = 1e-29 Identities = 116/140 (83%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 171886 ACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCC 171945 || || || || ||||||||||| || ||||| || ||||| ||||| ||| |||||||| Sbjct 211751 ACCGGCAAGACCATCACCCTCGAAGTCGAGTCTTCTGACACCATCGACAACGTCAAAGCC 211692 Query 171946 AAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAA 172005 ||||||||||| ||||| ||||| ||||| || || ||||| || || ||||| |||||| Sbjct 211691 AAGATTCAAGACAAGGAGGGCATCCCACCTGACCAACAACGCCTCATCTTTGCCGGTAAA 211632 Query 172006 CAGCTTGAAGATGGACGTAC 172025 ||||| || || |||||||| Sbjct 211631 CAGCTCGAGGACGGACGTAC 211612 Score = 132 bits (146), Expect = 6e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || |||||||||| || ||||| || || |||||||| || || || | ||||| ||| Sbjct 211250 GTGGTATGCAAATTTTCGTGAAGACTCTCACTGGAAAGACGATTACTTTGGAGGTGGAGA 211191 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 || || || || || |||| || ||||||||||| || || ||||| ||||||| Sbjct 211190 GCAGCGATACCATTGACAATGTCAAGGCAAAGATTCAAGACAAAGAGGGCATCCCACCCG 211131 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 | |||||| | || || ||||| || || || || ||||| || || || || |||| | Sbjct 211130 ACCAGCAAAGGCTCATCTTTGCCGGCAAGCAACTCGAAGACGGTCGCACGCTTTCTGACT 211071 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 ||||| | || ||||| |||||| || | || || | || || |||||| Sbjct 211070 ACAACATCCAGAAGGAAAGTACTCTTCATTTGGTGCTTCGTCTGCGCGGTGGT 211018 Score = 122 bits (134), Expect = 1e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171885 TACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGC 171944 |||||| || |||||||| || || || ||||| || ||||| ||||| ||| ||||||| Sbjct 212131 TACTGGCAAGACTATCACTCTTGAAGTCGAGTCCTCTGACACTATCGACAACGTCAAAGC 212072 Query 171945 CAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAA 172004 |||||| ||||| ||||| || ||||| || || || ||||| || || || || || || Sbjct 212071 CAAGATCCAAGACAAGGAGGGTATTCCCCCTGACCAACAACGTCTCATCTTCGCAGGCAA 212012 Query 172005 ACAGCTTGAAGATGGACGTACC 172026 ||||| ||||| || || ||| Sbjct 212011 GCAGCTCGAAGACGGCCGCACC 211990 >seq232 Length=169745 Score = 127 bits (140), Expect = 3e-24 Identities = 112/140 (80%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 171886 ACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCC 171945 || || || || |||||||| ||||| ||||| || ||||| ||||| || |||| ||| Sbjct 23936 ACGGGCAAGACGATCACCCTTGAGGTGGAGTCTTCGGACACCATCGACAATGTCAAGGCC 23995 Query 171946 AAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAA 172005 ||||||||||| ||||| || ||||||||||| || || || || || ||||| || || Sbjct 23996 AAGATTCAAGACAAGGAGGGAATTCCACCCGACCAACAGCGTCTGATCTTTGCAGGCAAG 24055 Query 172006 CAGCTTGAAGATGGACGTAC 172025 || || || ||||||||||| Sbjct 24056 CAACTGGAGGATGGACGTAC 24075 >seq265 Length=1618306 Score = 105 bits (116), Expect = 9e-18 Identities = 169/241 (70%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 195875 ATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATA 195934 || || ||||| || ||||| || || |||||||| | ||||| || |||||| || Sbjct 682492 ATTTTCGATCTTGGAGGTGGCACATTCGATGTCTCTTTGCTCAACATCACTGGTGGTGTA 682551 Query 195935 TTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGT 195994 || | || ||||| || || |||||||||||||| ||||| | || || || || | Sbjct 682552 TTTGCTGTCAAGGCGACCGCCGGTGATACTCATCTGGGTGGACAGGACTTTGA--CAACT 682609 Query 195995 CTT--CTCCGTCATTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAA 196052 ||| || || || | ||||||| || ||| | ||| | || || ||||| Sbjct 682610 CTTTGCTTGACCACTTCAAGAAGGAGTTCCAGCGCAAGCACAAGGAGGACATCTCTGGTG 682669 Query 196053 ATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTT 196112 || || | ||| ||||| || |||| |||||| || ||||| || ||||| ||||| | Sbjct 682670 ATGCTCGTGCTACCCGTCGTCTCAGGAGTGCATGCGAGCGTGCGAAGCGAACGCTCTCCT 682729 Query 196113 C 196113 | Sbjct 682730 C 682730 Score = 84.2 bits (92), Expect = 3e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 195776 ATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTAT 195835 ||||| ||||| | ||| | || ||||| || || || || || || ||||| || Sbjct 682167 ATTGCTGGTCTCGAAGTTCTGCGTATCATCAACGAGCCCACCGCTGCAGCCATTGCCTAC 682226 Query 195836 GGTCTGGACAAGAA--CAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTG 195893 ||||| ||| || || || ||| | || || | || || ||||| || |||| Sbjct 682227 GGTCTCGACTCCAAGTCATCCACCGAGA--AGAACGTTCTCATTTTCGATCTTGGAGGTG 682284 Query 195894 GTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTG 195953 | || || |||||||| || ||||| || ||||| | || | || ||||| || | Sbjct 682285 GCACATTCGATGTCTCTCTGCTCAACATCACTGGTGGCGTGTTTGCTGTCAAGGCGACCG 682344 Query 195954 CTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 | |||||||||||||| ||||| |||| || || Sbjct 682345 CCGGTGATACTCATCTGGGTGGACAAGACTTTGA 682378 >seq243 Length=834941 Score = 96.9 bits (106), Expect = 5e-15 Identities = 165/234 (71%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 195755 GCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTA-GAATTATCAATGAACC 195813 || || ||||| || | |||| || ||||| | | || || | ||| |||| || || Sbjct 665532 GCCACCAAGGATGCCGGCACTATCGCCGGTCTCA-CAGTTTTGCGTATTGTCAACGAGCC 665474 Query 195814 AACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATT 195873 ||||| || || ||||| ||||| ||||||||| |||| ||| | || ||| Sbjct 665473 CACAGCCGCAGCTATTGCGTATGGCCTGGACAAG---AAGGGCGA--CTCCCAAATTATC 665419 Query 195874 GATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTAT 195933 | ||| ||||| || |||||||| || |||||| | || ||| |||| || | Sbjct 665418 G-TCTACGATCTTGGAGGTGGTACATTCGATGTCAGCTTGCTGTCTATCGAAGACGGAGT 665360 Query 195934 ATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 ||||||||| ||| || || ||||| || ||||| || |||||||| ||||| Sbjct 665359 CTTCGAAGTACTGGCCACCGCAGGTGACACACATCTTGGAGGTGAAGACTTCGA 665306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657858411709200