Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq233 89.7 8e-13 >seq233 Length=223772 Score = 89.7 bits (98), Expect = 8e-13 Identities = 354/552 (64%), Gaps = 17/552 (3%) Strand=Plus/Plus Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 || ||||| || ||||| | |||||| |||| ||| || | || || || | | Sbjct 43223 CAGGCAAAGTCGGTGTGAAGACCTTCGTCTCGGGAGATGAGCTCATTGGAGAAGCTCAGT 43282 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 || ||||| | ||| || || || |||||||| || || || ||| | || ||||| Sbjct 43283 CCCGGCATCAGACCCCTCTTCTTGAGCCAAAAGATGGAAGCAAAAGATCCGGAGAAGAAG 43342 Query 18278 ATACCCTCAACGCACGCGAACGCTATTAATCTTTC-----AGCAAAACTGTATTTATTGC 18332 || ||||| ||| || || || || | ||| || || || | || | | | Sbjct 43343 ATGCCCTCGACGGCGGCAAAGGCGATCAGTCTCTCGGAGAAGGAAGATCGTCTGT----C 43398 Query 18333 TCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATAC-TCTCTATA 18391 || ||||| | ||||||| || | | | ||||| | | |||| | Sbjct 43399 GGAG-ATCCACCTGAGTGCCCAGTCAGCCTTTTGCTTGAC-CACGGGAATCGTCTCGACG 43456 Query 18392 GCATTAAACAAATCATCTTTTT-CTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGA 18450 |||| |||||| ||| | | || ||| || |||||||||||||| | || ||| Sbjct 43457 GCATCAAACAAGAACTCTCTCTGCTCTGGT-TCGCGGATATAAGTGTCGATGAGCAGAGA 43515 Query 18451 ATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTC 18510 || | || || || ||| | ||||| || || |||| ||||| |||| ||||| Sbjct 43516 GTAAGTCTCCGAGTGAATGTTCTCCATCATGATTTGGAAACCGTAAAAGCATCTGGCCTC 43575 Query 18511 GGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGC 18570 | ||| | ||| | |||| || ||||| |||||||| || || ||||| | Sbjct 43576 TGCTGCTTGCACCTCTTGCGAGAATCGCTCCACCAAGTTCTCATTCACGATGCCGTCCGA 43635 Query 18571 AGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTT 18630 || ||| || || || | || | | || || | ||||| || ||||| ||||| Sbjct 43636 AGCTGCAAAGAAGGCGAGCACGTGAGAGACAAAGTGCCTCTCATTGTCGTTGAGCTTGTT 43695 Query 18631 ---CCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTC 18687 ||| |||| | || || ||||| | |||||| | ||||||||||||| || Sbjct 43696 GTCCCAATCATGCAGGTCCTTGCTGAGATCGATTTCTTCTGCGGTCCAAAAAGATGCCTC 43755 Query 18688 GGCCTGTTTGTA 18699 |||| ||||| Sbjct 43756 TGCCTTCTTGTA 43767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731867563026000