Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq318 172 7e-37 seq265 114 2e-19 seq233 111 2e-18 seq269 95.1 1e-13 >seq318 Length=903324 Score = 172 bits (190), Expect = 7e-37 Identities = 274/393 (70%), Gaps = 15/393 (4%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 ||||| |||||||| || |||| ||| ||||| || |||||||| |||| ||||||| Sbjct 24193 TGGTCAACGTAGCGTGCAGTGTTGTTGAAGACTCGCAGCATGGGGACGATGCCGTTGCTA 24134 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 ||| |||||||| || | |||| |||| | |||| | ||||| | | ||| Sbjct 24133 AAGCCATTGGTGCCTGCAATGTAGCTTCCGGTGCCGCGAATGTTGTGGATGCTCAGGCCT 24074 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || ||||| | |||| || | |||||| ||||| |||||||||||||| ||| Sbjct 24073 ATACCACCGGCAGTCTTGCTAATCATGGCGCACGTCTTGAGAGTGTCGTAGATGCCGTCG 24014 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 || ||| |||||||| ||||| |||||||||||| ||| ||||| | ||||||| Sbjct 24013 ATGCTGTCATCCTTCATGCAGACGAGGAAGCACGACGAGAGTTGAGGGTGAGGCGTGCCG 23954 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGTG 1630365 ||||||||||| || || | || ||| || ||| |||||| || ||| || Sbjct 23953 GCGTTGAAGAGGGTCGGGGAGGCGTGGGTAAAGTACTTTTCGGACATGAGGTTGTACGTC 23894 Query 1630366 GCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGACG 1630425 | | |||| | |||| |||| || || | | ||| | ||||||| Sbjct 23893 TCAATCACG---------GAATCG---ACGT---CATCGCCGTGGATGCCAACGGCGACG 23849 Query 1630426 CGCATGAGCATGTACTGGGGCCGCTCGACGACG 1630458 ||||| | ||||| ||| || || ||| ||||| Sbjct 23848 CGCATAATCATGTGCTGAGGACGTTCGGCGACG 23816 Score = 91.5 bits (100), Expect = 2e-12 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 1626987 GACGGTAAACTGGATGGCGTCGGCGGCGGGCCTGGTGCGCAGATAGTACATGCCGGTCTT 1627046 |||||| ||||| ||||||| |||||| ||||||||||||||||||||| |||| ||||| Sbjct 25589 GACGGTGAACTGAATGGCGTTGGCGGCAGGCCTGGTGCGCAGATAGTACGTGCCCGTCTT 25530 Query 1627047 GAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGTGA 1627084 ||| || ||| |||| ||||||||| |||| Sbjct 25529 GAGTCCCTTCTTCCAGCCGTAAAAGTGCATCGAGGTGA 25492 Score = 89.7 bits (98), Expect = 6e-12 Identities = 272/426 (64%), Gaps = 10/426 (2%) Strand=Plus/Minus Query 1628162 ACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGG 1628221 ||| || |||||||||||||||||| | | | || |||||||||| ||||||| Sbjct 24633 ACTCGATGATCTCGGTGCACAGGTTACTGCTCTTGATGGTGCCCAGGTTCTTCTGGTTGC 24574 Query 1628222 TGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCG 1628281 | | |||| | || ||||||| ||||| |||| ||| |||||||| ||||| Sbjct 24573 TCTTGCGGTTCGCCGCATCCTTGTACAGCATAAAGGGGTTGCCAGTCTCGATTTGCGCTT 24514 Query 1628282 CGACGATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGC---GCGCGGCCCTNNN 1628338 | | |||||| |||| | || |||| | || || ||| ||||| |||| Sbjct 24513 CCAAGATGGCGTACCACAGCTTTTGCGC---CTTGATGGTGCGCTTGGCGCGACCCTCCG 24457 Query 1628339 NNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCG 1628398 ||||| || |||| ||| ||| || ||| || Sbjct 24456 CTTCGTACTTTTCGTACAGCGCTTCAAACTCCTCGCCATAGACTTCGGCCATGCCAGGGC 24397 Query 1628399 CCTCGGACGGACAAAAGAGCGACCAGTCGCCA--CCGGTCACCGCGCGGCGCATAAAGAG 1628456 |||| || || | | ||| ||||| | | || | ||| | || ||||| Sbjct 24396 ACTCGTTGGGGCACATCAAGCTCCACTCGCCGTTCTGTTCGACACGCTTC--ATGAAGAG 24339 Query 1628457 GTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTT 1628516 ||| ||||||| ||||| || || ||||| || || |||||||| ||||| || Sbjct 24338 GTCTGGGATCCACAGCGCGTAGAACAGCTCGCGTGCTCGCACTTCCTCCTTTCCGTGATT 24279 Query 1628517 CTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAA 1628576 ||| ||||| || | |||| |||||| | |||||| ||||| |||| |||||| Sbjct 24278 CTTGCGCAGGTCCAGGAACTCGAAAATGTCAGAGTGCCAGGGCTCGGCGTAGATGGCAAA 24219 Query 1628577 GGCGCC 1628582 |||||| Sbjct 24218 GGCGCC 24213 >seq265 Length=1618306 Score = 114 bits (126), Expect = 2e-19 Identities = 93/113 (82%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 || |||||| | ||||| || ||||||||||||||||||||||| || | ||| | || Sbjct 1021201 CTGTTTGAGATCATCCTGGCAGCCAACTACCTCGACATCAAGCCCTTGTTGGATGTGGGA 1021142 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAA 1592280 |||||| | || || |||||||||||||||||| | || |||||||| ||||| Sbjct 1021141 TGCAAGACGGTAGCAAACATGATCAAGGGCAAGACTCCGGAGGAGATTCGCAA 1021089 >seq233 Length=223772 Score = 111 bits (122), Expect = 2e-18 Identities = 200/288 (69%), Gaps = 7/288 (2%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||||||||| || ||| | || ||| ||| || || ||||| || || | ||| Sbjct 43243 ACCTTCGTCTCGGGAGATGAGCTCATTGGAGAAGCTCAGTCCCGGCATCAGACCCCTCTT 43302 Query 869239 CTTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 869297 ||||||||||||||||| ||| ||| || ||||| |||||||||||||||||||||| Sbjct 43303 CTTGAGCCAAAAGATGGAAGCA-AAAGATCCGGAGAAGAAGATGCCCTCGACGGCGGCAA 43361 Query 869298 AGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTC-CTTGTTGATCCACTTCATCGCC 869356 || |||| || | ||||| |||| || | || | | ||||||| | | ||| Sbjct 43362 AGGCGATCAGTCTCTCGGAGAAGG----AAGATCGTCTGTCGGAGATCCACCTGAGTGCC 43417 Query 869357 CAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTT 869416 ||||| ||||||| | | ||| || | ||| |||| ||| ||| | | || | Sbjct 43418 CAGTCAGCCTTTTGCTTGACCACGGGAATCGTCTCGACGGCATCAAACAAGAACTCTCTC 43477 Query 869417 TCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTCC 869464 | | || || || ||| |||||||| || || || || |||||| Sbjct 43478 TGCTCTGGTTCGCGGATATAAGTGTCGATGAGCAGAGAGTAAGTCTCC 43525 Score = 91.5 bits (100), Expect = 2e-12 Identities = 167/244 (68%), Gaps = 3/244 (1%) Strand=Plus/Plus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 ||||||| |||||||| || ||| ||||| ||||||||| || ||||||| ||| Sbjct 43524 CCGAGTGAATGTTCTCCATCATGATTTGGAAACCGTAAAAGCATCTGGCCTCTGCTGCTT 43583 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | ||||| | | ||| || | ||| |||||| |||||||||||| || || | Sbjct 43584 GCACCTCTTGCGAGAATCGCTCCACCAAGTTCTCATTCACGATGCCGTCCGAAGCTGCAA 43643 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGC---GACACCCAGT 869807 | || || || ||||| || |||||| | ||| | |||| ||||| |||| | Sbjct 43644 AGAAGGCGAGCACGTGAGAGACAAAGTGCCTCTCATTGTCGTTGAGCTTGTTGTCCCAAT 43703 Query 869808 GGACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTT 869867 ||| |||||| || | || || |||||||| | || ||||| ||||| | Sbjct 43704 CATGCAGGTCCTTGCTGAGATCGATTTCTTCTGCGGTCCAAAAAGATGCCTCTGCCTTCT 43763 Query 869868 TGTA 869871 |||| Sbjct 43764 TGTA 43767 >seq269 Length=523869 Score = 95.1 bits (104), Expect = 1e-13 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 19053 ATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCCGTGC 19112 ||||| || || || || ||||| ||| |||||||| | ||| | |||||||| Sbjct 485689 ATCGGTGGTACCGTCACTTGCGTTCTTCGTAACGTGCCACCCGGCTTGGGCGAGCCAGCG 485630 Query 19113 TTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGGA 19172 || |||||| ||||||| |||| ||||| |||||| || || || ||||| |||||| Sbjct 485629 TTCGACAAGCTCGAGGCGACGCTAGCCCATGCCATGTTGAGCATTCCCGCCACGAAGGGA 485570 Query 19173 TTCGAGATTGGCAGCGGGTT 19192 |||||| ||||| ||| || Sbjct 485569 TTCGAGTTTGGCTCCGGATT 485550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107099398628745