Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq318 167 2e-36 seq221 145 7e-30 seq233 109 5e-19 seq275 93.3 4e-14 >seq318 Length=903324 Score = 167 bits (184), Expect = 2e-36 Identities = 938/1471 (64%), Gaps = 58/1471 (4%) Strand=Plus/Minus Query 138160 ACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTCCCGTTTTT 138219 || || |||| ||||| | ||||| || | || | |||||| ||| | ||||| || Sbjct 25588 ACGGTGAACTGAATGGCGTTGGCGGCAGGCCTGGTGCGCAGATAGTACGTGCCCGTCTTG 25529 Query 138220 AACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGTCGGTTTCGCC 138279 | || || | |||| |||| | ||| ||||| ||||| | | ||||| | Sbjct 25528 AGTCCCTTCTTCCAGCCGTAAAAGTGCATCGAGGTGAGCTGTCCAAACGTCGGCGATTGC 25469 Query 138280 AGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATGGCCATGTTA 138339 ||| ||||| || |||||| || |||||| || || ||||| ||||| | Sbjct 25468 AGATGAATGTTCAAGCTTTGACTTTGGCAGATGAATGCTCCACGATCGGCAGCCATCTCG 25409 Query 138340 ATTAAATTTTTACTTTTC----ATCTCCCACACGGTCTTGTATAGATCACGAATA-TGTC 138394 || | | |||||| ||||||||||| |||||||| || | || |||| Sbjct 25408 ATGA----TCGACTTTTGCGAAATCTCCCACACCGTCTTGTAGAGCGCCTTGATCCTGTC 25353 Query 138395 GCGGTATTGTTGCAATATTTTGAATGCTCCCGT--TGGCCGCAATGATGCGATTTCTCAT 138452 | ||||| | || ||||| ||| ||| ||| ||||||||||| ||| |||| Sbjct 25352 G-GGTATGCCGGGAACGTTTTGGATGGAGCCGCCATGG--GCAATGATGCGGTTTTTCAT 25296 Query 138453 GTCATCGTTGTACAGATTCAACTTGATCAAGTCGTTTATCAGATATCTGTTTATGACCTG 138512 | | || || ||||| | || || || ||| | || | ||| | || || Sbjct 25295 GCCCTCATTCCACAGACCCTGCTCGACCAGCTCGCGCAGCAACCACGGGTTGACAACTTG 25236 Query 138513 AAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTC 138572 || || ||||||| || ||||| ||| |||||| ||| | |||||||| |||| Sbjct 25235 GAACTCTCCGGCCAGCACACGACGCGTGTAGATGTTGGATGTGTAGGGCTCAAAGCATTC 25176 Query 138573 GTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATT 138632 |||| || |||||||||| |||| ||||| |||||| || | || || || || Sbjct 25175 GTTGAAGCCGAGAATCTGAGAGGTGGAGGCGGTAGGCATGGGTGCGAGCAGCAGCGAGTT 25116 Query 138633 CCGTAAACCGTGAAGCTTG--ATTCGTTC-CTTGAGCGACGACCAGTCCCACAAATCGCT 138689 || | ||||| ||| | | || | | ||| |||| | ||| |||||||| || Sbjct 25115 GCGAAGACCGT---GCTCGGAAATCTTGCTCTTCAGCGTGGTCCAATCCCACAAGTCAGA 25059 Query 138690 AGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGTA 138749 |||| | | |||||| |||||||| | | |||| ||||| ||||| ||| Sbjct 25058 AGGTGTGACGCCCCACATGTCGTACTGCAGCTCTCCCTTGGAGGCGGGCGAGCCTTGGTA 24999 Query 138750 CGAATCGTATACACCAAACTCTTGCGCCAACTCG-TTGCTCGCCTCGAGCGCACCATAGT 138808 | | ||| ||| ||| || | |||| | || ||| || || | | || Sbjct 24998 GGTCTGGTAGGGACCGTCGCGTTGGGCAAGCTCGCAAGAGCG-CTCCAGTGCGGCGTGGT 24940 Query 138809 AAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGC 138868 | || || ||| ||| |||| |||||| || || |||| || | | ||||| Sbjct 24939 AGATGGTCTCGAAAATTTGCTTGTTGAGCTTGCGCGCTTCGGGCGAGTCAAAGGCCATGC 24880 Query 138869 GGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCA 138928 ||| ||| |||| || |||||||| |||||||| || | |||| || || || || | Sbjct 24879 CGAGGATCATGAAAGCATCGGCCAGACCTTGCACTCCGATGCCGATGGGACGGTGACGGA 24820 Query 138929 GATTTG-ACGCTTTTGCGGCT--TCGATAGGATAATAGTTTACATCGATGATTTTGTTTA 138985 || | ||| ||| || |||| ||||| ||||| || |||||||| ||| | Sbjct 24819 AGTTGGAACG---ACGCGCCTCCTCGACGGGATAGTAGTTGACGTCGATGATGCGGTTCA 24763 Query 138986 AATTTCGCAC-GACCACCTTAGTCGTATGCTTTAATCGTTCAAAATCGTATGTGCCCCCG 139044 || | ||| || ||||| | || || | || ||| | || ||| | | Sbjct 24762 GGTTGC-CACAGATGACCTTTG-CGACGGCGTGAA--GTTTCTTAAAGT-TGTACGAC-- 24710 Query 139045 TTGTCGTCGACGACGTCGACAAATTTGTTGACA--CAAATCGAGGCTATGTTGCACACCG 139102 ||| ||||| | ||||| || | || || || || || | |||||| || | Sbjct 24709 TTG--GTCGAAG-TGTCGATGAA--CGATGGCAGGGCGATGGATGCCAAGTTGCAGACGG 24655 Query 139103 CCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCG 139162 | || ||||| || | ||| |||| || |||| |||| ||||| | |||||| | Sbjct 24654 CAACCTCGTCTGGCGCAGAGTACTCGATGATCTCGGTGCACAGGTTACTGCTCTTGATGG 24595 Query 139163 TACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTG 139222 | || | || | || ||||| || ||||| ||||| ||||| |||||| | || Sbjct 24594 TGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTCGCCGCATCCTTGTACAGCATAAAGGGGT 24535 Query 139223 TGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCTTGTATTTGAC 139282 ||||||| || | ||| | || | ||| | ||| | || | || | Sbjct 24534 TGCCAGTCTCGATTTGCGCTTCCAAGATGGCGTACCACAGCTTTTGCGCCTTGATGGTGC 24475 Query 139283 GCACGTAAAGTTCGTCGCGC-TCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAG 139341 || | | | || ||| |||||||||||||| || | || || || || ||| Sbjct 24474 GCTTGGCGCGACCCTC-CGCTTCGTACTTTTCGTACAGCGCTTCAAACTCCTCGCCATAG 24416 Query 139342 GCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTG 139401 | || | | | | |||| || || ||||| | ||| |||||||| | | Sbjct 24415 ACTTCGGCCATGCCAGGGCACTCGTTGGGGCACATCAAGCTCCACTCGCCGTTCTGTTCG 24356 Query 139402 ACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGC-----CT 139456 || ||| ||||||| || || || ||||||| ||| | | || ||||| || || Sbjct 24355 ACACGCTTCATGAAGAGGTCTGGGATCCACAGCGCGTAGAACAGCTCGCGTGCTCGCACT 24296 Query 139457 TCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCC 139516 || | ||||| | || || || || ||||| || |||| ||||| ||||| Sbjct 24295 TCCTCCTTTCCG--TGATTCTTGCG---CAGGTCCAGGAACTCGAAAATGTCAGAGTGCC 24241 Query 139517 ATGGTTCCAGATAGATGGCCATTGCGCC---TTTCCGTTTGCCACCTTGATCGACGTGTC 139573 | || || |||||||| | ||||| || ||||||||||| || |||| | Sbjct 24240 AGGGCTCGGCGTAGATGGCAAAGGCGCCAGGCCTCTTGTTGCCACCTTGGTCAACGTAGC 24181 Query 139574 GTACAGCATTATTGAATACGCGCAACATCGG 139604 || ||| || ||||| || |||| ||| || Sbjct 24180 GTGCAGTGTTGTTGAAGACTCGCAGCATGGG 24150 >seq221 Length=819827 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || | || || || || || ||||| || || || | | Sbjct 381970 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACCATCACGCTGGAGGTCGAGAGCTCG 382029 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || |||||||||||| Sbjct 382030 GACACTATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCTCCCGATCAA 382089 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | ||||||||||| || || |||||||||||| || | | |||| || || ||| Sbjct 382090 CAAAGATTGATCTTTGCGGGCAAGCAGCTGGAGGATGGAAGGACCCTGTCGGACTACAAC 382149 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933 ||||| |||||||| || || ||| | |||||||| ||||| || || || Sbjct 382150 ATTCAGAAGGAATCCACTCTCCACCTCGTGTTGCGTTTGCGTGGCGGTGG 382199 Score = 100 bits (110), Expect = 3e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 ||||||||||||||||| || || |||||||| ||||| ||| ||||||||||||| || Sbjct 381826 AAGATCCAAGACAAAGAGGGCATTCCTCCCGACCAACAGCGTCTGATCTTTGCCGGAAAG 381885 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAA 24895 ||||| |||||| |||| |||| || || ||||| || || ||| Sbjct 381886 CAGCTCGAGGATGGCAGAACTTTGTCCGACTACAACATCCAGAAAGAA 381933 >seq233 Length=223772 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || ||||| || || || || | || ||||| | | Sbjct 211473 ATGCAGATCTTTGTCAAAACCCTCACCGGAAAGACGATCACTTTGGAGGTAGAGAGTAGC 211414 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||||||||||||||||||| || ||||| ||||| Sbjct 211413 GATACCATTGACAACGTCAAGGCAAAGATCCAAGACAAAGAAGGCATTCCTCCTGATCAG 211354 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| | || ||||| || ||||| || || || | | | | || || || ||| Sbjct 211353 CAACGCCTCATTTTTGCTGGCAAACAACTCGAAGACGGTCGCACCCTTTCCGACTACAAC 211294 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||||| ||||| || || ||||||||| Sbjct 211293 ATTCAGAAGGAGAGCACGCTTCACTTGGTG 211264 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 ||||| || || || || |||||||| || | | ||||| | || | || ||| Sbjct 211751 ACCGGCAAGACCATCACCCTCGAAGTCGAGTCTTCTGACACCATCGACAACGTCAAAGCC 211692 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 ||||| |||||||| || || || || || || |||||||| | ||||||||||| ||| Sbjct 211691 AAGATTCAAGACAAGGAGGGCATCCCACCTGACCAACAACGCCTCATCTTTGCCGGTAAA 211632 Query 24848 CAGCTGGAGGA 24858 ||||| ||||| Sbjct 211631 CAGCTCGAGGA 211621 >seq275 Length=588737 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || ||||| || || || | || || || | | Sbjct 39197 ATGCAGATTTTCGTCAAGACCCTGACGGGTAAGACCATCACCTTGGAGGTCGAGTCTTCG 39256 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| || ||||| ||||| || ||| Sbjct 39257 GACACGATCGACAATGTGAAGGCCAAGATCCAAGACAAGGAGGGAATTCCTCCTGACCAA 39316 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | ||||| || || || ||||| |||||| || | |||| || || ||| Sbjct 39317 CAACGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCAGGACTCTGTCCGACTACAAC 39376 Query 24884 ATTCAAAAGGA 24894 || || ||||| Sbjct 39377 ATCCAGAAGGA 39387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449894872495800