Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq89 109 5e-19 seq221 93.3 3e-14 >seq89 Length=167526 Score = 109 bits (120), Expect = 5e-19 Identities = 194/277 (70%), Gaps = 6/277 (2%) Strand=Plus/Minus Query 34345 CACAACACAAACTTGCGGATGAAACCATCAAGCAGGT-CCTGTAACTTAACGGAGTCGTG 34403 |||| ||||| ||| ||||||| | || ||||| | |||| | | ||| | ||| Sbjct 31287 CACAGGACAAATTTGGTGATGAAATCGTCGAGCAGCTTCCTG-AGGGCATCGGCTTGGTG 31229 Query 34404 GGAGCCGTTGACGATGAATCGTTCGTTTTTGTAATCGACCTGCGTTTGCGCGCCCAGCTC 34463 | || || || ||| |||| || || |||| || || |||||||||||||||| || Sbjct 31228 CGCTCCATTCACAATGTATCGATCATTCTTGTCGTCCACTTGCGTTTGCGCGCCCAATTC 31169 Query 34464 GCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGTCCAAGCGCCTTGGCGATTTCGGG 34523 | ||||||| |||| || || || | || || || | || || || || |||| Sbjct 31168 GAACCCGAAAAACTTGGTGGGATACGTTGCAGGTCGACTTAGGGCTCGAGCAATGTCGGA 31109 Query 34524 CATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCTTCGACCTTGG--CGCAGATG 34581 ||||||| | ||| |||||||| ||||| ||| | ||||||| ||||| ||| | Sbjct 31108 CATGTTGGGCACGACCGTCTTGATACCGTTACCCCTGCCTTCGATCTTGGTCTGCA-ACA 31050 Query 34582 CGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACAT 34618 | ||||| |||||||||||| ||| |||||| Sbjct 31049 AG-GGCATGCGGTAGCGGTAGAATTGATCCTCCACAT 31014 >seq221 Length=819827 Score = 93.3 bits (102), Expect = 3e-14 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CG-GAGCCTG 110330 |||||||| ||||| || || || || ||||| ||||| || | || || |||| | Sbjct 381970 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACCATCACGCTGGAGGTCGAGAGCTCG 382029 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 || ||| ||| | | || || ||||| ||||| || || | || |||| Sbjct 382030 --GACACTATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCTCCCGATC 382087 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 |||||||| | || | |||||| || ||||||||||||| || || || |||| |||| Sbjct 382088 AACAAAGATTGATCTTTGCGGGCAAGCAGCTGGAGGATGGAAGGACCCTGTCGGACTACA 382147 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 ||||||| || ||||| || | ||| | ||||| Sbjct 382148 ACATTCAGAAGGAATCCACTCTCCACCTCGTGTT 382181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412839159719105