Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq233 150 3e-30 seq318 138 2e-26 seq265 122 1e-21 seq217 89.7 8e-12 >seq233 Length=223772 Score = 150 bits (166), Expect = 3e-30 Identities = 232/328 (71%), Gaps = 5/328 (2%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||||||||| || ||| | || ||| |||| || || ||||| || || | ||| Sbjct 43243 ACCTTCGTCTCGGGAGATGAGCTCATTGGAGAAGCTCAGTCCCGGCATCAGACCCCTCTT 43302 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||||||||||| | ||| || ||||| ||||||||||||||||||||||| Sbjct 43303 CTTGAGCCAAAAGATGGAAGCAAAAGATCCGGAGAAGAAGATGCCCTCGACGGCGGCAAA 43362 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCT-TTGTTGATCCACTTCATCGCCC 794518 | ||| || | ||||| | ||| || | ||| | | ||||||| | | |||| Sbjct 43363 GGCGATCAGTCTCTCGG-AGAAG---GAAGATCGTCTGTCGGAGATCCACCTGAGTGCCC 43418 Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCT 794578 | || ||||||| | | ||| ||| | ||| |||| ||| ||| | | || ||| Sbjct 43419 AGTCAGCCTTTTGCTTGACCACGGGAATCGTCTCGACGGCATCAAACAAGAACTCTCTCT 43478 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 | || || || || ||||||||||| || ||||| ||||| ||||| ||||| | Sbjct 43479 GCTCTGGTTCGCGGATATAAGTGTCGATGAGCAGAGAGTAAGTCTCCGAGTGAATGTTCT 43538 Query 794639 CGATGGCGATCTGGAAGCCATAAAAGCA 794666 | || ||| ||||| || |||||||| Sbjct 43539 CCATCATGATTTGGAAACCGTAAAAGCA 43566 Score = 96.9 bits (106), Expect = 5e-14 Identities = 146/207 (71%), Gaps = 3/207 (1%) Strand=Plus/Plus Query 796140 AAAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGC 796199 ||| || |||||||| | | |||| ||||| | | ||| || | ||| ||||||| Sbjct 43561 AAAGCATCTGGCCTCTGCTGCTTGCACCTCTTGCGAGAATCGCTCCACCAAGTTCTCATT 43620 Query 796200 CACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTC 796259 |||||||||||| || || || |||||||| ||||| || |||||| | ||| | Sbjct 43621 CACGATGCCGTCCGAAGCTGCAAAGAAGGCGAGCACGTGAGAGACAAAGTGCCTCTCATT 43680 Query 796260 GTCGCTGAGC---GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGT 796316 |||| ||||| | |||| | | ||| || ||| |||| || || ||||| Sbjct 43681 GTCGTTGAGCTTGTTGTCCCAATCATGCAGGTCCTTGCTGAGATCGATTTCTTCTGCGGT 43740 Query 796317 CCAAAAGGAGGCCTCGGCCTTTTTGTA 796343 |||||| || ||||| ||||| ||||| Sbjct 43741 CCAAAAAGATGCCTCTGCCTTCTTGTA 43767 >seq318 Length=903324 Score = 138 bits (152), Expect = 2e-26 Identities = 270/398 (68%), Gaps = 16/398 (4%) Strand=Plus/Minus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 ||||| || ||||| || |||| ||| ||||| || |||||||| || | ||||||| Sbjct 24193 TGGTCAACGTAGCGTGCAGTGTTGTTGAAGACTCGCAGCATGGGGACGATGCCGTTGCTA 24134 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 ||| |||||||| || | |||| || | | |||| | ||||| | | ||| Sbjct 24133 AAGCCATTGGTGCCTGCAATGTAGCTTCCGGTGCCGCGAATGTTGTGGATGCTCAGGCCT 24074 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 || || ||||| | |||| || | |||||| | || || || ||||||||||| ||| Sbjct 24073 ATACCACCGGCAGTCTTGCTAATCATGGCGCACGTCTTGAGAGTGTCGTAGATGCCGTCG 24014 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 || ||| |||||||| | || |||||||||||| ||| ||| | | ||||||| Sbjct 24013 ATGCTGTCATCCTTCATGCAGACGAGGAAGCACGACGAGAGTTGAGGGTGAGGCGTGCCG 23954 Query 2073781 GCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGTG 2073840 || |||||||| || || | || || | ||| || ||||||| | ||| || Sbjct 23953 GCGTTGAAGAGGGTCGGGGAGGCGTGGGTAAAGTACTTTTCGGACATGAGGTTGTACGTC 23894 Query 2073841 GCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCGACG 2073900 | | |||| | || ||||| || || | | ||| | ||||||| Sbjct 23893 TCAATCACG---------GAATC---GACGT---CATCGCCGTGGATGCCAACGGCGACG 23849 Query 2073901 CGCATGATCATGTACTGGGGTCGCTCGACGACGGCGTC 2073938 ||||| ||||||| ||| || || ||| |||| ||||| Sbjct 23848 CGCATAATCATGTGCTGAGGACGTTCGGCGAC-GCGTC 23812 Score = 96.9 bits (106), Expect = 5e-14 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 2069256 GACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCGGTCTT 2069315 |||||| ||||| ||||||||||||||||||| |||||||||||||||| |||| ||||| Sbjct 25589 GACGGTGAACTGAATGGCGTTGGCGGCAGGCCTGGTGCGCAGATAGTACGTGCCCGTCTT 25530 Query 2069316 GAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGA 2069353 ||| || ||| |||| ||||||||| |||| Sbjct 25529 GAGTCCCTTCTTCCAGCCGTAAAAGTGCATCGAGGTGA 25492 >seq265 Length=1618306 Score = 122 bits (134), Expect = 1e-21 Identities = 136/178 (76%), Gaps = 8/178 (4%) Strand=Plus/Minus Query 2035568 CAAGCGCACCGAC-GACATTTCGCCGTGGGAC---AAGGCCTTTTGCGAGGTCGACCAAC 2035623 ||||||||| ||| |||||||| ||||||| ||| | || | ||||||||| Sbjct 1021262 CAAGCGCAC-GACTGACATTTCCGAGTGGGACGCCAAGTTCATTC---AAGTCGACCAAG 1021207 Query 2035624 CCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATT 2035683 | || |||||| | ||||| || |||||||||||||||||||||||| | | ||| Sbjct 1021206 AGATGCTGTTTGAGATCATCCTGGCAGCCAACTACCTCGACATCAAGCCCTTGTTGGATG 1021147 Query 2035684 TGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAA 2035741 |||| |||||||| || || ||| | |||||||||||| | || ||||| || ||||| Sbjct 1021146 TGGGATGCAAGACGGTAGCAAACATGATCAAGGGCAAGACTCCGGAGGAGATTCGCAA 1021089 >seq217 Length=470480 Score = 89.7 bits (98), Expect = 8e-12 Identities = 127/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 ||||||| || | |||||| ||||| |||| ||||||| ||| || || || ||| || Sbjct 240524 ACTTGGTCACCGACTTGGTGCCCTCAGAGATGGCGTGCTTGGAGAGCTCTCCAGGCAGGA 240465 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC-GC 1485591 | || || || ||||||||||||||||| | || ||| ||| |||||| || | | Sbjct 240464 TGAGACGAACAGCGGTCTGGATCTCGCGAGAGCTGATGGTGGACTTCTTGTT-GTACTGA 240406 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 || || | |||||||| | ||||| |||| ||||| | || || ||||| Sbjct 240405 GCAAGCTTGGAGGCCTCGGCAGCAATGCGCTCGAAGATGTCCTGAACGAAGGAGTT 240350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916194808337915