Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq275 118 7e-22 seq233 116 2e-21 seq221 100 2e-16 >seq275 Length=588737 Score = 118 bits (130), Expect = 7e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| |||||||||||||| ||||| ||||| || || | | |||| Sbjct 39408 AGCACAAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGCCATCC 39349 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || |||||||| || ||||| ||||| | || | ||||||||||| Sbjct 39348 TCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCAGGAGGAATTCCCTCCTTGTCT 39289 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || || | |||| || | |||||| || | ||| |||||| Sbjct 39288 TGGATCTTGGCCTTCACATTGTCGATCGTGTCCGAAGACTCGACCTCCAAGGTGATGGTC 39229 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || ||||| |||||||| || || ||||||||| Sbjct 39228 TTACCCGTCAGGGTCTTGACGAAAATCTGCATG 39196 >seq233 Length=223772 Score = 116 bits (128), Expect = 2e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| |||||||||||||||||||| ||||| || ||| |||| | || Sbjct 211262 AGCACCAAGTGAAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGACCGTCT 211321 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| || || || || || || |||||||| || | || | || || ||||| Sbjct 211322 TCGAGTTGTTTGCCAGCAAAAATGAGGCGTTGCTGATCAGGAGGAATGCCTTCTTTGTCT 211381 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||| |||||| | || | || | ||| || || | || || ||| Sbjct 211382 TGGATCTTTGCCTTGACGTTGTCAATGGTATCGCTACTCTCTACCTCCAAAGTGATCGTC 211441 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| |||||||| || |||||||||||||| Sbjct 211442 TTTCCGGTGAGGGTTTTGACAAAGATCTGCAT 211473 >seq221 Length=819827 Score = 100 bits (110), Expect = 2e-16 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || | ||| | || || ||||| | ||| |||||||||||||| |||||||| Sbjct 382196 CCGCCACGCAAACGCAACACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCCGAC 382137 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | | |||| ||||| ||||| || || ||||||| || ||| || || | || Sbjct 382136 AGGGTCCTTCCATCCTCCAGCTGCTTGCCCGCAAAGATCAATCTTTGTTGATCGGGAGGA 382077 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTC 34926 | ||||||||||| | || || ||||| || | ||||| || | ||| Sbjct 382076 ATACCCTCCTTGTCCTGGATCTTGGCCTTGAC--AT--TGTCGATAGTGTCCGAGCTCTC 382021 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || | || |||||||| || || | |||||| |||||||| ||||| Sbjct 382020 GACCTCCAGCGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 381970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325690874850215