Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq221 134 1e-26 seq233 132 4e-26 >seq221 Length=819827 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | |||||||| ||| | || || |||||||| || |||||||| || |||| Sbjct 382196 CCGCCACGCAAACGCAACACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCCGAC 382137 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | ||| || || || ||||| ||| | ||||||||||| ||||| || ||| Sbjct 382136 AGGGTCCTTCCATCCTCCAGCTGCTTGCCCGCAAAGATCAATCTTTGTTGATCGGGAGGA 382077 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||| ||||| || | || |||||| | || | |||||| || || || Sbjct 382076 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATAGTGTCCGAGCTCTCGACC 382017 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || |||||||| ||||| || ||||| || ||||| Sbjct 382016 TCCAGCGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 381970 >seq233 Length=223772 Score = 132 bits (146), Expect = 4e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| |||||||| ||||||||| || || |||||||| || || | || ||||||| Sbjct 211258 ACGAAGCACCAAGTGAAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGACC 211317 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || |||||||||||||||||| | || | | ||||||||| || ||||| || ||||| Sbjct 211318 GTCTTCGAGTTGTTTGCCAGCAAAAATGAGGCGTTGCTGATCAGGAGGAATGCCTTCTTT 211377 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | ||| ||||| | || | || || | ||||| || | ||| || Sbjct 211378 GTCTTGGATCTTTGCCTTGACGTTGTCAATGGTATCGCTACTCTCTACCTCCAAAGTGAT 211437 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || | |||||| ||||| |||||||| Sbjct 211438 CGTCTTTCCGGTGAGGGTTTTGACAAAGATCTGCAT 211473 Score = 105 bits (116), Expect = 5e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 29556 TTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC 29615 ||| || || | || ||| |||||||||||||| || ||| || || ||||| || || Sbjct 211015 TTGACCACCGCGCAGACGAAGCACCAAATGAAGAGTACTTTCCTTCTGGATGTTGTAGTC 211074 Query 29616 CGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGG 29675 | || |||||| || |||||||| ||||| ||| | || | |||||||| || || Sbjct 211075 AGAAAGCGTGCGACCGTCTTCGAGTTGCTTGCCGGCAAAGATGAGCCTTTGCTGGTCGGG 211134 Query 29676 CGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTT 29734 || || |||||||||||||| ||| |||| |||||| | || | || || | Sbjct 211135 TGGGATGCCCTCTTTGTCTTG-AATCTTTGCCTTGACATTGTCAATGGTATCGCTGCTCT 211193 Query 29735 CTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || | ||| || || || ||||| | || || || || || ||||| Sbjct 211194 CCACCTCCAAAGTAATCGTCTTTCCAGTGAGAGTCTTCACGAAAATTTGCAT 211245 Score = 87.8 bits (96), Expect = 1e-12 Identities = 118/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 29602 TGAATGTTATAATC-CGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAA 29660 || ||||| || || | ||| |||||| || ||||| || ||||| || | || | Sbjct 211970 TGGATGTTGTAGTCGCTCAA-GGTGCGGCCGTCTTCGAGCTGCTTGCCTGCGAAGATGAG 212028 Query 29661 TCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTAC 29720 | ||| || || || ||||||||||| |||||||| | || |||||| | || | Sbjct 212029 ACGTTGTTGGTCAGGGGGAATACCCTCCTTGTCTTGGATCTTGGCTTTGACGTTGTCGAT 212088 Query 29721 AGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 ||||||||| || ||||||||||| ||||| |||||||| Sbjct 212089 AGTGTCAGAGGACTCGACTTCAAGAGTGATAGTCTTGCCAGT 212130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385216922993385